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1.4k
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Comment: C: from coordinate to motif
6.4 years ago by Prakash ★ 2.2k
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0
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2.2k
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Answer: A: Can renaming, copying, or moving the omics data file corrupt it?
6.4 years ago by Prakash ★ 2.2k
1
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1
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2.2k
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Answer: A: Ranking of Bioinformatics tools & resources by the number of users
6.4 years ago by Prakash ★ 2.2k
1
vote
1
reply
3.9k
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Comment: C: How to do differential peak analysis after scaling BAM files
6.4 years ago by Prakash ★ 2.2k
0
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1
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3.9k
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Comment: C: How to do differential peak analysis after scaling BAM files
6.4 years ago by Prakash ★ 2.2k
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0
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2.1k
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Comment: C: Multiple transcripts for same gene in array gene expression profile?
6.4 years ago by Prakash ★ 2.2k
0
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1
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1.5k
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Comment: C: Correlation of TF Binding with expression data
6.4 years ago by Prakash ★ 2.2k
1
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3
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1.5k
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Correlation of TF Binding with expression data
ChIP-Seq RNA-Seq
updated 6.4 years ago by 7.1k • written 6.4 years ago by ★ 2.2k
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0
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1.3k
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Answer: A: annotatePeaks.pl without annotation in genes name
6.4 years ago by Prakash ★ 2.2k
1
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0
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1.8k
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Comment: C: Connect gene names to GO terms/function for loading in DESeq2
6.5 years ago by Prakash ★ 2.2k
1
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1
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1.8k
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Answer: A: Connect gene names to GO terms/function for loading in DESeq2
6.5 years ago by Prakash ★ 2.2k
1
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0
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2.8k
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Answer: A: hierarchical clustering heat map to RNAseq data
6.5 years ago by Prakash ★ 2.2k
1
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0
replies
2.3k
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Comment: A: GSEA top genes vs all platform
6.5 years ago by Prakash ★ 2.2k
0
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0
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12k
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Answer: A: How to convert transcript level TPM to gene level TPM ?
6.5 years ago by Prakash ★ 2.2k
0
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0
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2.3k
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Comment: C: Bedsect: An integrated web server application to perform intersection, visualiza
6.5 years ago by Prakash ★ 2.2k
7
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2
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2.3k
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Tool: Bedsect: An integrated web server application to perform intersection, visualization and functional annotation of genomic regions from multiple datas…
next-gen ChIP-Seq
updated 19 months ago by 44k • written 6.5 years ago by ★ 2.2k
1
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1
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4.3k
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Answer: A: Delta z score between control and treatment
6.5 years ago by Prakash ★ 2.2k
2
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4
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1.9k
views
Module- Triat relationship in WGCNA
RNA-Seq
updated 20 months ago by 44k • written 6.5 years ago by ★ 2.2k
1
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0
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17k
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Answer: A: duplicate 'row.names' are not allowed
6.6 years ago by Prakash ★ 2.2k
0
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1
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7.5k
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Answer: A: Picard MarkDuplicates flag vs remove issue
6.6 years ago by Prakash ★ 2.2k
1
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0
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2.4k
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Answer: A: HOMER annotatePeaks.pl 'Unique Peak ID' in first column changed in output file
6.6 years ago by Prakash ★ 2.2k
0
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0
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1.3k
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Answer: A: The chip-seq binding sites of POLR2B indicate the PoII pause there
6.8 years ago by Prakash ★ 2.2k
0
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1
reply
1.7k
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RNAseq and ChIPseq integration
RNA-Seq ChIP-Seq
6.9 years ago by Prakash ★ 2.2k
0
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0
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3.6k
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Comment: C: how to subset sequences based on IDs, but order shall remain preserved?
7.0 years ago by Prakash ★ 2.2k
0
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3
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3.6k
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Answer: A: how to subset sequences based on IDs, but order shall remain preserved?
7.0 years ago by Prakash ★ 2.2k
0
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0
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3.6k
views
Comment: C: how to subset sequences based on IDs, but order shall remain preserved?
7.0 years ago by Prakash ★ 2.2k
0
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1
reply
1.1k
views
Comment: C: Cufflinks analysis for transcriptome assembly
7.0 years ago by Prakash ★ 2.2k
0
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0
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3.6k
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Comment: C: how to subset sequences based on IDs, but order shall remain preserved?
7.0 years ago by Prakash ★ 2.2k
0
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1
reply
3.6k
views
Comment: C: how to subset sequences based on IDs, but order shall remain preserved?
7.0 years ago by Prakash ★ 2.2k
0
votes
1
reply
3.6k
views
Comment: C: how to subset sequences based on IDs, but order shall remain preserved?
7.0 years ago by Prakash ★ 2.2k
0
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0
replies
1.7k
views
Answer: A: What is my total number of genes in a hypergeometic distribution test?
7.0 years ago by Prakash ★ 2.2k
1
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0
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5.5k
views
Answer: A: Doing GSEA analysis on a set of genes
7.2 years ago by Prakash ★ 2.2k
1
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1
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3.3k
views
Comment: C: how to keep column 6 (normalized tag count) in peaks.txt file called by Homer ca
7.2 years ago by Prakash ★ 2.2k
1
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1
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3.3k
views
Comment: C: how to keep column 6 (normalized tag count) in peaks.txt file called by Homer ca
7.2 years ago by Prakash ★ 2.2k
14
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3
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29k
views
Answer: A: Gene Set Enrichment Analysis after DESeq2
7.2 years ago by Prakash ★ 2.2k
4
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1
reply
3.3k
views
Answer: A: how to keep column 6 (normalized tag count) in peaks.txt file called by Homer ca
7.2 years ago by Prakash ★ 2.2k
0
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0
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3.2k
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Comment: C: Motif database of choice
7.4 years ago by Prakash ★ 2.2k
0
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1
reply
4.1k
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Comment: A: Nomalize chip-seq data
7.4 years ago by Prakash ★ 2.2k
1
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0
replies
2.0k
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Answer: A: Explanation of BETA output
7.4 years ago by Prakash ★ 2.2k
1
vote
1
reply
7.6k
views
Answer: A: How to find out whether Chip-seq peaks falls within promoter or enhancer region
7.4 years ago by Prakash ★ 2.2k
0
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1
reply
3.9k
views
Answer: A: Cuffnorm: which output file should I use
7.4 years ago by Prakash ★ 2.2k
3
votes
4
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6.0k
views
Samtools rmdup and Piccard Markduplicates
alignment next-gen
updated 7.4 years ago by 5.9k • written 7.4 years ago by ★ 2.2k
0
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0
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6.0k
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Comment: C: Samtools rmdup and Piccard Markduplicates
7.4 years ago by Prakash ★ 2.2k
1
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1
reply
3.0k
views
Comment: C: PCR duplicates in RNASeq
7.4 years ago by Prakash ★ 2.2k
6
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3
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3.0k
views
PCR duplicates in RNASeq
RNA-Seq
updated 20 months ago by 44k • written 7.4 years ago by ★ 2.2k
0
votes
1
reply
1.5k
views
Different FPKM values for same condition form cufflink
RNA-Seq
updated 8.3 years ago by 148k • written 8.3 years ago by ★ 2.2k
1
vote
2
replies
3.1k
views
Finding instances of motifs near peaks
ChIP-Seq
updated 2.4 years ago by 44k • written 9.2 years ago by ★ 2.2k
0
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2
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3.7k
views
Comment: C: how to get p value for a set of fdr value
9.3 years ago by Prakash ★ 2.2k
8
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14
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3.7k
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how to get p value for a set of fdr value
fdr correlation
updated 2.4 years ago by 44k • written 9.3 years ago by ★ 2.2k
0
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0
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3.7k
views
Comment: Comment: how to get p value for a set of fdr value
updated 2.4 years ago by 44k • written 9.3 years ago by ★ 2.2k
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