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Answer: Answer: GFF to BED conversion
3 days ago by Alex Reynolds 34k
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315
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Answer: Answer: Mapping chromosome location to gene ID
24 days ago by Alex Reynolds 34k
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339
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Answer: Answer: Comparing bed files for shifts and enlargements
25 days ago by Alex Reynolds 34k
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337
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Comment: Comment: qualimap - bed file error - BED format error, there should be at least 6 fields.
26 days ago by Alex Reynolds 34k
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314
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Answer: Answer: How to create bed file from list of variants with indels and bp values
5 weeks ago by Alex Reynolds 34k
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408
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Comment: Comment: sliding windows over genome
6 weeks ago by Alex Reynolds 34k
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453
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Comment: Comment: Can I successfully go from a bed file (narrowpeak) back to a bam file containing
6 weeks ago by Alex Reynolds 34k
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408
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Answer: Answer: sliding windows over genome
6 weeks ago by Alex Reynolds 34k
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4.5k
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Comment: Comment: Finding Chip Seq Overlaps with Bed files
7 weeks ago by Alex Reynolds 34k
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285
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Answer: Answer: "moving average" function for "coverage" signal in bed files?
7 weeks ago by Alex Reynolds 34k
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288
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Answer: Answer: How to interpret similar motifs in Homer results
8 weeks ago by Alex Reynolds 34k
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376
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Comment: Comment: Why the bed file not recognized as a bed file
10 weeks ago by Alex Reynolds 34k
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376
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Answer: Answer: Why the bed file not recognized as a bed file
10 weeks ago by Alex Reynolds 34k
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296
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Answer: Answer: Circos plot
10 weeks ago by Alex Reynolds 34k
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386
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Answer: Answer: SARS-CoV-2 genome on NCBI website
11 weeks ago by Alex Reynolds 34k
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270
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Answer: Answer: deeptools plotHeatMap - Convert bed files to gene list?
3 months ago by Alex Reynolds 34k
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270
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Comment: Comment: deeptools plotHeatMap - Convert bed files to gene list?
3 months ago by Alex Reynolds 34k
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374
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Comment: Comment: Find genes of interest in large unannotated genome files
3 months ago by Alex Reynolds 34k
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4
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1.2k
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How to iterate over rows of pyranges object
pyranges
updated 3 months ago by ▴ 10 • written 15 months ago by 34k
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374
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Answer: Answer: Find genes of interest in large unannotated genome files
3 months ago by Alex Reynolds 34k
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302
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Answer: Answer: bedtools -u not giving unique files
3 months ago by Alex Reynolds 34k
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545
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Answer: Answer: How to convert .wib files to .wig or .bed?
4 months ago by Alex Reynolds 34k
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365
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Comment: Comment: Determining the transcription factor activators for a particular gene
4 months ago by Alex Reynolds 34k
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420
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Answer: Answer: Map genomic coordinate to specific chromosome region
4 months ago by Alex Reynolds 34k
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321
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Answer: Answer: TET2 Binding Motifs BED file
4 months ago by Alex Reynolds 34k
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315
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Comment: Comment: Non-zero return code 127 from
4 months ago by Alex Reynolds 34k
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751
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Answer: Answer: Tips and tricks to improve data visualization in bioinformatics
4 months ago by Alex Reynolds 34k
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546
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Comment: Comment: Mince a vcf into n bins of a given range
5 months ago by Alex Reynolds 34k
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546
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Answer: Answer: Mince a vcf into n bins of a given range
5 months ago by Alex Reynolds 34k
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544
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Answer: Answer: Change the interval of bed file
5 months ago by Alex Reynolds 34k
2
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1
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736
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Answer: Answer: How to create specific .bed files for a panel of genes
5 months ago by Alex Reynolds 34k
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1
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462
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Answer: Answer: Merge two multi-chromosome WIG files
5 months ago by Alex Reynolds 34k
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998
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Answer: Answer: Getting peak heights from TF chIP-seq data (wig file)
6 months ago by Alex Reynolds 34k
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1.8k
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Answer: Answer: Random Subset of Individuals from .BED File (.ped not available)
6 months ago by Alex Reynolds 34k
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385
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Answer: Answer: are there some software to compute depth？
6 months ago by Alex Reynolds 34k
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449
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Answer: Answer: Annotating genes from the coordinates of variants of a VCF file
6 months ago by Alex Reynolds 34k
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2.0k
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Comment: Comment: How to search dbSNP using a list of SNPs and retrieve Gene name (hgnc symbol if
6 months ago by Alex Reynolds 34k
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611
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Comment: Comment: Distinguishing between ambiguously mapped reads in a split bamToBed file
6 months ago by Alex Reynolds 34k
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460
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Answer: Answer: How to describe an insertion in BED format file?
6 months ago by Alex Reynolds 34k
1
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0
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975
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Comment: Comment: To create a multi fasta file which contains each gene's exons
6 months ago by Alex Reynolds 34k
2
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408
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Answer: Answer: From where to get a comprehensive list of genes with gene start, gene end and ch
6 months ago by Alex Reynolds 34k
1
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0
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975
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Comment: Comment: To create a multi fasta file which contains each gene's exons
6 months ago by Alex Reynolds 34k
1
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1
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975
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Answer: Answer: To create a multi fasta file which contains each gene's exons
6 months ago by Alex Reynolds 34k
1
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0
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474
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Answer: Answer: Plotting a long string of (x,y) values as a chromosome
6 months ago by Alex Reynolds 34k
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533
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Comment: Comment: Create junctions from Bed file for IGV visualization
6 months ago by Alex Reynolds 34k
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1
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533
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Answer: Answer: Create junctions from Bed file for IGV visualization
6 months ago by Alex Reynolds 34k
1
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1
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1.3k
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Answer: Answer: How to cut a 15000 sequence file into multiple files of 1000nt each and save it
7 months ago by Alex Reynolds 34k
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564
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Comment: Comment: Bioinformatics in Graviton2 AWS
7 months ago by Alex Reynolds 34k
2
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247
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News: BED format specification
bed bedops
7 months ago by Alex Reynolds 34k
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0
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755
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Comment: Comment: API for retrieving genes' sequences from genes' symbols in a single call
7 months ago by Alex Reynolds 34k
2,782 results • Page 1 of 56
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