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3
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5
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1.1k
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Neither pysam nor samtools reading HTTPS-sourced BAM file correctly
bam pysam samtools
updated 7 months ago by 100k • written 7 months ago by 35k
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3.8k
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Comment: Comment: Reproduce the article "The complete sequence of a human genome."
7 months ago by Alex Reynolds 35k
5
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2
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3.8k
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Answer: Answer: Reproduce the article "The complete sequence of a human genome."
7 months ago by Alex Reynolds 35k
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1.6k
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Comment: Comment: bedops alternative for bedtools -unionbedg ?
7 months ago by Alex Reynolds 35k
3
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2
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1.6k
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Answer: Answer: bedops alternative for bedtools -unionbedg ?
7 months ago by Alex Reynolds 35k
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1
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1.4k
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Answer: Answer: Is Bioinformatics a Professional Degree?
7 months ago by Alex Reynolds 35k
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845
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Answer: Answer: Scanning a genomic region for TFBS
8 months ago by Alex Reynolds 35k
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585
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Answer: Answer: Identify binding motifs within large super enhancer region
9 months ago by Alex Reynolds 35k
1
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0
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1.6k
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Comment: Comment: What happens when a bioinformatician has his own genome sequenced for $300?
10 months ago by Alex Reynolds 35k
5
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0
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1.6k
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Comment: Comment: What happens when a bioinformatician has his own genome sequenced for $300?
10 months ago by Alex Reynolds 35k
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0
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873
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Answer: Answer: BED files
10 months ago by Alex Reynolds 35k
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0
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3.2k
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Comment: Comment: Decoding MM and ML tags in .SAM file
10 months ago by Alex Reynolds 35k
1
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1
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662
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Answer: Answer: how to intersect multiple bed files and get results in uncollapsed genomic inter
10 months ago by Alex Reynolds 35k
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354
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LAD/TAD and recombination hotspot data
hotspot recombination lad tad
11 months ago by Alex Reynolds 35k
1
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2
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3.2k
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Answer: Answer: Decoding MM and ML tags in .SAM file
9 months ago by Alex Reynolds 35k
3
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4
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862
views
Fast BAM header editing
bam
updated 11 months ago by ★ 3.8k • written 11 months ago by 35k
0
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0
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862
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Comment: Comment: Fast BAM header editing
11 months ago by Alex Reynolds 35k
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1
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1.6k
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Comment: Comment: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
11 months ago by Alex Reynolds 35k
1
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1
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1.6k
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Comment: Comment: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
11 months ago by Alex Reynolds 35k
1
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1
reply
1.6k
views
Answer: Answer: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
11 months ago by Alex Reynolds 35k
0
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1
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620
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Answer: Answer: Does it possible to know what are the adjacent genes up to 1000bp upstream and
13 months ago by Alex Reynolds 35k
0
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1
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2.1k
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Comment: Comment: gtf2bed not converting to bed
13 months ago by Alex Reynolds 35k
1
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1
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2.1k
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Comment: Comment: gtf2bed not converting to bed
13 months ago by Alex Reynolds 35k
0
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2
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2.1k
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Comment: Comment: gtf2bed not converting to bed
13 months ago by Alex Reynolds 35k
2
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0
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2.1k
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Answer: Answer: gtf2bed not converting to bed
13 months ago by Alex Reynolds 35k
1
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0
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582
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Answer: Answer: How do you get functional/biological role of motifs?
15 months ago by Alex Reynolds 35k
0
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0
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939
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Comment: Comment: Merging and intersecting genomic ranges for an indefinite number of files
16 months ago by Alex Reynolds 35k
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0
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939
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Answer: Answer: Merging and intersecting genomic ranges for an indefinite number of files
16 months ago by Alex Reynolds 35k
0
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1
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939
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Answer: Answer: Merging and intersecting genomic ranges for an indefinite number of files
16 months ago by Alex Reynolds 35k
2
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1
reply
903
views
Answer: Answer: How can I use nohup command when filtering SNPs?
16 months ago by Alex Reynolds 35k
1
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0
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1.2k
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Answer: Answer: Bedtools merge but only if intersection exists
16 months ago by Alex Reynolds 35k
0
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0
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519
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Comment: Comment: trackBrowser: Visualization of sequencing data within a given genome region
17 months ago by Alex Reynolds 35k
0
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0
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9.1k
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Comment: Comment: Laptops for bioinformatics
17 months ago by Alex Reynolds 35k
1
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1
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1.6k
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Comment: Comment: How to find overlapping regions in a single bed file
19 months ago by Alex Reynolds 35k
1
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1
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1.6k
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Answer: Answer: How to find overlapping regions in a single bed file
19 months ago by Alex Reynolds 35k
0
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0
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849
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Comment: Comment: Unable to install bedops and bedtools on windows 11
20 months ago by Alex Reynolds 35k
0
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0
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1.7k
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Comment: Comment: Count regions that overlap with python
21 months ago by Alex Reynolds 35k
0
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0
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1.7k
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Comment: Comment: Count regions that overlap with python
21 months ago by Alex Reynolds 35k
0
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1
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1.7k
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Answer: Answer: Count regions that overlap with python
21 months ago by Alex Reynolds 35k
2
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0
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2.2k
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Answer: Answer: Best formats for storing large amounts of data for random access
21 months ago by Alex Reynolds 35k
0
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0
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468
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Answer: Answer: Visualization of trascription factor family grouped by biological function
21 months ago by Alex Reynolds 35k
1
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0
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56k
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Comment: Comment: How Can I Know The Length Of Mapped Reads From Bam File?
21 months ago by Alex Reynolds 35k
1
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0
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2.7k
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Answer: Answer: GFF to BED conversion
21 months ago by Alex Reynolds 35k
2
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1
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1.2k
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Answer: Answer: Mapping chromosome location to gene ID
22 months ago by Alex Reynolds 35k
0
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0
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805
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Answer: Answer: Comparing bed files for shifts and enlargements
22 months ago by Alex Reynolds 35k
1
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0
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1.8k
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Comment: Comment: qualimap - bed file error - BED format error, there should be at least 6 fields.
22 months ago by Alex Reynolds 35k
0
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0
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1.4k
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Answer: Answer: How to create bed file from list of variants with indels and bp values
23 months ago by Alex Reynolds 35k
0
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1
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1.8k
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Comment: Comment: sliding windows over genome
23 months ago by Alex Reynolds 35k
1
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0
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1.5k
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Comment: Comment: Can I successfully go from a bed file (narrowpeak) back to a bam file containing
23 months ago by Alex Reynolds 35k
0
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1
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1.8k
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Answer: Answer: sliding windows over genome
23 months ago by Alex Reynolds 35k
2,872 results • Page 2 of 58
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