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Answer: Answer: Bedtools - converting multiple bam files to bed
10 months ago by Alex Reynolds 34k
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381
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Answer: Answer: How to graphically represent a known DNA motif in a list of DNA sequences
10 months ago by Alex Reynolds 34k
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2.0k
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Comment: Comment: How to search dbSNP using a list of SNPs and retrieve Gene name (hgnc symbol if
10 months ago by Alex Reynolds 34k
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1000
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Answer: Answer: k-mer counters - presence/absence matrix
10 months ago by Alex Reynolds 34k
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573
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Answer: Answer: How to a determine and output if numbers in matrix are above a certain value?
11 months ago by Alex Reynolds 34k
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110k
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Comment: Comment: Extract Reads From A Bam File That Fall Within A Given Region
11 months ago by Alex Reynolds 34k
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110k
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Comment: Comment: Extract Reads From A Bam File That Fall Within A Given Region
11 months ago by Alex Reynolds 34k
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900
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Answer: Answer: Use bioinformatics tool in iphone 7
11 months ago by Alex Reynolds 34k
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748
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Answer: Answer: homebrew Vs bioconda
11 months ago by Alex Reynolds 34k
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110k
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Comment: Comment: Extract Reads From A Bam File That Fall Within A Given Region
11 months ago by Alex Reynolds 34k
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1
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110k
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Comment: Comment: Extract Reads From A Bam File That Fall Within A Given Region
11 months ago by Alex Reynolds 34k
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573
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Comment: Comment: annotate sites with gene info
11 months ago by Alex Reynolds 34k
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14k
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Comment: Comment: BEDOPS gtf2bed conversion error with Ensembl GTF
11 months ago by Alex Reynolds 34k
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573
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Comment: Comment: annotate sites with gene info
11 months ago by Alex Reynolds 34k
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1
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667
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Answer: Answer: Sum up value within a interval
12 months ago by Alex Reynolds 34k
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1.1k
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Comment: Comment: Trouble getting BLAT to work
12 months ago by Alex Reynolds 34k
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882
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Comment: Comment: Ensure identical output between platforms and operating systems
12 months ago by Alex Reynolds 34k
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882
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Comment: Comment: Ensure identical output between platforms and operating systems
12 months ago by Alex Reynolds 34k
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1.4k
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Comment: Comment: Trying to run FIMO from Meme suite using command line
12 months ago by Alex Reynolds 34k
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1.4k
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Comment: Comment: Trying to run FIMO from Meme suite using command line
12 months ago by Alex Reynolds 34k
2
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1
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1.4k
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Answer: Answer: Trying to run FIMO from Meme suite using command line
12 months ago by Alex Reynolds 34k
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570
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Answer: Answer: how to sort the rows of a file as a matrix?
12 months ago by Alex Reynolds 34k
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668
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Comment: Comment: How to find out TFBS motifs within 5'-UTR sequences
12 months ago by Alex Reynolds 34k
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1
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766
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Comment: Comment: KentUtils Installation Problem
12 months ago by Alex Reynolds 34k
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1
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766
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Answer: Answer: KentUtils Installation Problem
12 months ago by Alex Reynolds 34k
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1
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668
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Answer: Answer: How to find out TFBS motifs within 5'-UTR sequences
12 months ago by Alex Reynolds 34k
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2
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20k
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Getting list of chromosome names from indexed BAM file
bam samtools
updated 12 months ago by ▴ 40 • written 8.2 years ago by 34k
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737
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Comment: Comment: convert Ensemble to HGNC symbols in a file with several columns
12 months ago by Alex Reynolds 34k
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1
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737
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Answer: Answer: convert Ensemble to HGNC symbols in a file with several columns
12 months ago by Alex Reynolds 34k
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564
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Comment: Comment: Divide the genome to vary lengths windows in R
12 months ago by Alex Reynolds 34k
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737
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Answer: Answer: How to search for genes 100Kb up and downstream of any genomic site
12 months ago by Alex Reynolds 34k
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787
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Answer: Answer: How to find overlapping coordinates of a gtf file
12 months ago by Alex Reynolds 34k
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343
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Comment: Comment: Interpret PCA as combinations of SNPs
12 months ago by Alex Reynolds 34k
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406
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Answer: Answer: getting a set of coverage/depth metrics for multiple regions
12 months ago by Alex Reynolds 34k
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4.0k
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Comment: Comment: k-mer finding and counting
12 months ago by Alex Reynolds 34k
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558
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Answer: Answer: Getting peak (bed narrowPeak) from signals (Wig)
12 months ago by Alex Reynolds 34k
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300
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Answer: Answer: Gradient Descent for gene degradation
12 months ago by Alex Reynolds 34k
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1
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372
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Answer: Answer: Best hit from BLAST for a particular genomic region
12 months ago by Alex Reynolds 34k
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473
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Answer: Answer: How to print the header of bed file and the lines that belong to chromosome 2
13 months ago by Alex Reynolds 34k
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1
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549
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Answer: Answer: Bedops split bed coordinates with zero based half opened format
13 months ago by Alex Reynolds 34k
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1.0k
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Comment: Comment: Bash operations
13 months ago by Alex Reynolds 34k
4
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1.0k
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Answer: Answer: Bash operations
13 months ago by Alex Reynolds 34k
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1
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2.3k
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Comment: Comment: specific k-mer count in multi fasta file
13 months ago by Alex Reynolds 34k
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479
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Answer: Answer: NNNNNN in genomic file and promoter sequence
13 months ago by Alex Reynolds 34k
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560
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Comment: Comment: how to plot one-dimeson heatmap using R
13 months ago by Alex Reynolds 34k
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0
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948
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Answer: Answer: How to plot "Distribution of SNPs per Mbp"
13 months ago by Alex Reynolds 34k
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2.1k
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Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
13 months ago by Alex Reynolds 34k
2
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1
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2.1k
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Answer: Answer: BED file: Find intervals that overlap a certain percentage and keep the longest
13 months ago by Alex Reynolds 34k
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2
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2.1k
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Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
13 months ago by Alex Reynolds 34k
1
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1
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1.1k
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Comment: Comment: How do I properly visualize ATAC seq data on UCSC browser
13 months ago by Alex Reynolds 34k
2,782 results • Page 3 of 56
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