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Answer:
Answer: How to interpret similar motifs in Homer results
22 months ago by
Alex Reynolds
35k
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1.3k
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Comment:
Comment: Why the bed file not recognized as a bed file
23 months ago by
Alex Reynolds
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1.3k
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Answer:
Answer: Why the bed file not recognized as a bed file
23 months ago by
Alex Reynolds
35k
0
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1
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1.0k
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Answer:
Answer: Circos plot
23 months ago by
Alex Reynolds
35k
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1
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868
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Answer:
Answer: SARS-CoV-2 genome on NCBI website
23 months ago by
Alex Reynolds
35k
0
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1.3k
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Answer:
Answer: deeptools plotHeatMap - Convert bed files to gene list?
24 months ago by
Alex Reynolds
35k
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1
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1.3k
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Comment:
Comment: deeptools plotHeatMap - Convert bed files to gene list?
2.0 years ago by
Alex Reynolds
35k
0
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0
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843
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Comment:
Comment: Find genes of interest in large unannotated genome files
2.0 years ago by
Alex Reynolds
35k
4
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4
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2.5k
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How to iterate over rows of pyranges object
pyranges
updated 2.0 years ago by
markfilan
▴ 10 • written 3.0 years ago by
Alex Reynolds
35k
1
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1
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843
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Answer:
Answer: Find genes of interest in large unannotated genome files
2.0 years ago by
Alex Reynolds
35k
0
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1
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733
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Answer:
Answer: bedtools -u not giving unique files
2.0 years ago by
Alex Reynolds
35k
3
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1
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1.8k
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Answer:
Answer: How to convert .wib files to .wig or .bed?
2.1 years ago by
Alex Reynolds
35k
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0
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760
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Comment:
Comment: Determining the transcription factor activators for a particular gene
2.1 years ago by
Alex Reynolds
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6
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1.5k
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Answer:
Answer: Map genomic coordinate to specific chromosome region
2.1 years ago by
Alex Reynolds
35k
0
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0
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992
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Answer:
Answer: TET2 Binding Motifs BED file
2.1 years ago by
Alex Reynolds
35k
0
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0
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764
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Comment:
Comment: Non-zero return code 127 from
2.1 years ago by
Alex Reynolds
35k
1
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1.9k
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Answer:
Answer: Tips and tricks to improve data visualization in bioinformatics
2.1 years ago by
Alex Reynolds
35k
0
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0
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1.6k
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Comment:
Comment: Mince a vcf into n bins of a given range
2.2 years ago by
Alex Reynolds
35k
0
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1
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1.6k
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Answer:
Answer: Mince a vcf into n bins of a given range
2.2 years ago by
Alex Reynolds
35k
2
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1
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1.4k
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Answer:
Answer: Change the interval of bed file
2.2 years ago by
Alex Reynolds
35k
3
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1
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3.7k
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Answer:
Answer: How to create specific .bed files for a panel of genes
2.2 years ago by
Alex Reynolds
35k
3
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1
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1.3k
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Answer:
Answer: Merge two multi-chromosome WIG files
2.2 years ago by
Alex Reynolds
35k
1
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1
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2.8k
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Answer:
Answer: Getting peak heights from TF chIP-seq data (wig file)
2.2 years ago by
Alex Reynolds
35k
1
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0
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3.0k
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Answer:
Answer: Random Subset of Individuals from .BED File (.ped not available)
2.2 years ago by
Alex Reynolds
35k
0
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0
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811
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Answer:
Answer: are there some software to compute depth?
2.2 years ago by
Alex Reynolds
35k
1
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1
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1.2k
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Answer:
Answer: Annotating genes from the coordinates of variants of a VCF file
2.2 years ago by
Alex Reynolds
35k
1
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1
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3.8k
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Comment:
Comment: How to search dbSNP using a list of SNPs and retrieve Gene name (hgnc symbol if
2.2 years ago by
Alex Reynolds
35k
1
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1
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1.0k
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Comment:
Comment: Distinguishing between ambiguously mapped reads in a split bamToBed file
2.3 years ago by
Alex Reynolds
35k
1
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1
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1.1k
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Answer:
Answer: How to describe an insertion in BED format file?
2.3 years ago by
Alex Reynolds
35k
1
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0
replies
2.1k
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Comment:
Comment: To create a multi fasta file which contains each gene's exons
2.3 years ago by
Alex Reynolds
35k
2
votes
0
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856
views
Answer:
Answer: From where to get a comprehensive list of genes with gene start, gene end and ch
2.3 years ago by
Alex Reynolds
35k
1
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0
replies
2.1k
views
Comment:
Comment: To create a multi fasta file which contains each gene's exons
2.3 years ago by
Alex Reynolds
35k
1
vote
1
reply
2.1k
views
Answer:
Answer: To create a multi fasta file which contains each gene's exons
2.3 years ago by
Alex Reynolds
35k
1
vote
0
replies
1.1k
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Answer:
Answer: Plotting a long string of (x,y) values as a chromosome
2.3 years ago by
Alex Reynolds
35k
0
votes
0
replies
1.2k
views
Comment:
Comment: Create junctions from Bed file for IGV visualization
2.3 years ago by
Alex Reynolds
35k
1
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1
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1.2k
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Answer:
Answer: Create junctions from Bed file for IGV visualization
2.3 years ago by
Alex Reynolds
35k
1
vote
1
reply
2.4k
views
Answer:
Answer: How to cut a 15000 sequence file into multiple files of 1000nt each and save it
2.3 years ago by
Alex Reynolds
35k
0
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0
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1.2k
views
Comment:
Comment: Bioinformatics in Graviton2 AWS
2.3 years ago by
Alex Reynolds
35k
2
votes
0
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545
views
News:
BED format specification
bed
bedops
2.3 years ago by
Alex Reynolds
35k
0
votes
0
replies
1.6k
views
Comment:
Comment: API for retrieving genes' sequences from genes' symbols in a single call
2.3 years ago by
Alex Reynolds
35k
2
votes
1
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906
views
Answer:
Answer: BEDOPS bedmap confusing file for option
2.3 years ago by
Alex Reynolds
35k
1
vote
1
reply
799
views
Answer:
Answer: How to find gene annotation given a position in a bacterial genome
2.3 years ago by
Alex Reynolds
35k
2
votes
0
replies
926
views
Answer:
Answer: Fq file to table
2.3 years ago by
Alex Reynolds
35k
0
votes
1
reply
1.6k
views
Answer:
Answer: API for retrieving genes' sequences from genes' symbols in a single call
2.3 years ago by
Alex Reynolds
35k
0
votes
1
reply
1.2k
views
Answer:
Answer: Bioinformatics in Graviton2 AWS
2.3 years ago by
Alex Reynolds
35k
1
vote
0
replies
2.1k
views
Comment:
Comment: How to infer the TSS from a gtf file
2.3 years ago by
Alex Reynolds
35k
1
vote
1
reply
2.1k
views
Answer:
Answer: How to infer the TSS from a gtf file
2.3 years ago by
Alex Reynolds
35k
2
votes
1
reply
1.3k
views
Answer:
Answer: Merging Bed files with depth information
2.3 years ago by
Alex Reynolds
35k
1
vote
1
reply
1.7k
views
Answer:
Answer: Generate DNA string
2.3 years ago by
Alex Reynolds
35k
1
vote
0
replies
1.1k
views
Answer:
Answer: how does one draw a horizontal line across a gosling.js plot
2.3 years ago by
Alex Reynolds
35k
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