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217
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Answer:
Answer: Error occurs when migrate-n software performs "make mpis"
2 days ago by
Alex Reynolds
35k
1
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1
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367
views
Answer:
Answer: Coverage depth map of genome from multiple sample coverage bedgraphs?
3 days ago by
Alex Reynolds
35k
0
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0
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592
views
Answer:
Answer: Convert Gene symbol to Ensembl ID
15 days ago by
Alex Reynolds
35k
2
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0
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401
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Answer:
Answer: line 164: 15342 Segmentation fault (core dumped) ${cmd} ${options} - 0<&0
5 weeks ago by
Alex Reynolds
35k
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1
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598
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Answer:
Answer: Random Access remote BAM files
5 weeks ago by
Alex Reynolds
35k
2
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1
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399
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Answer:
Answer: Double counts with bedtools intersect?
10 weeks ago by
Alex Reynolds
35k
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1
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1.2k
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Answer:
Answer: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
11 weeks ago by
Alex Reynolds
35k
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0
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352
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Answer:
Answer: identify genes
12 weeks ago by
Alex Reynolds
35k
3
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2
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542
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Answer:
Answer: Where can I get a list of SNPs mapping overlapping genes in humans?
3 months ago by
Alex Reynolds
35k
1
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0
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694
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Answer:
Answer: Filter a BED file based on genome coordinates for gene names
4 months ago by
Alex Reynolds
35k
1
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0
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355
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Answer:
Answer: distance between chip peaks and individual TSS
4 months ago by
Alex Reynolds
35k
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0
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564
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Answer:
Answer: Simple tools for creation of figures of gene and protein structure
4 months ago by
Alex Reynolds
35k
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0
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478
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Answer:
Answer: Visualize raw rna fastq file and aligned bam file
5 months ago by
Alex Reynolds
35k
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0
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1.1k
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Answer:
Answer: Getting the overlap between two GTF files
5 months ago by
Alex Reynolds
35k
1
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1
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600
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Answer:
Answer: Mapping SNP rsIds/ positions to genes coding for proteins
6 months ago by
Alex Reynolds
35k
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0
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685
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Answer:
Answer: BED files
6 months ago by
Alex Reynolds
35k
0
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0
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415
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Answer:
Answer: Visualize where kmers are on a reference genome
6 months ago by
Alex Reynolds
35k
2
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0
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700
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Answer:
Answer: Create 10,000bp windows for a SNP file and assign each SNP to its respective win
6 months ago by
Alex Reynolds
35k
5
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2
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3.7k
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Answer:
Answer: Reproduce the article "The complete sequence of a human genome."
6 months ago by
Alex Reynolds
35k
3
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2
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1.6k
views
Answer:
Answer: bedops alternative for bedtools -unionbedg ?
6 months ago by
Alex Reynolds
35k
0
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1
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1.4k
views
Answer:
Answer: Is Bioinformatics a Professional Degree?
7 months ago by
Alex Reynolds
35k
0
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0
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811
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Answer:
Answer: Scanning a genomic region for TFBS
7 months ago by
Alex Reynolds
35k
0
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0
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546
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Answer:
Answer: Identify binding motifs within large super enhancer region
8 months ago by
Alex Reynolds
35k
0
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0
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841
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Answer:
Answer: BED files
9 months ago by
Alex Reynolds
35k
1
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1
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630
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Answer:
Answer: how to intersect multiple bed files and get results in uncollapsed genomic inter
9 months ago by
Alex Reynolds
35k
1
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2
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3.0k
views
Answer:
Answer: Decoding MM and ML tags in .SAM file
8 months ago by
Alex Reynolds
35k
1
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1
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1.5k
views
Answer:
Answer: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
10 months ago by
Alex Reynolds
35k
0
votes
1
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593
views
Answer:
Answer: Does it possible to know what are the adjacent genes up to 1000bp upstream and
12 months ago by
Alex Reynolds
35k
2
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0
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2.0k
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Answer:
Answer: gtf2bed not converting to bed
12 months ago by
Alex Reynolds
35k
1
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0
replies
561
views
Answer:
Answer: How do you get functional/biological role of motifs?
14 months ago by
Alex Reynolds
35k
0
votes
0
replies
891
views
Answer:
Answer: Merging and intersecting genomic ranges for an indefinite number of files
15 months ago by
Alex Reynolds
35k
0
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1
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891
views
Answer:
Answer: Merging and intersecting genomic ranges for an indefinite number of files
15 months ago by
Alex Reynolds
35k
2
votes
1
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874
views
Answer:
Answer: How can I use nohup command when filtering SNPs?
15 months ago by
Alex Reynolds
35k
1
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0
replies
1.2k
views
Answer:
Answer: Bedtools merge but only if intersection exists
16 months ago by
Alex Reynolds
35k
1
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1
reply
1.6k
views
Answer:
Answer: How to find overlapping regions in a single bed file
18 months ago by
Alex Reynolds
35k
0
votes
1
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1.6k
views
Answer:
Answer: Count regions that overlap with python
20 months ago by
Alex Reynolds
35k
2
votes
0
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2.1k
views
Answer:
Answer: Best formats for storing large amounts of data for random access
20 months ago by
Alex Reynolds
35k
0
votes
0
replies
453
views
Answer:
Answer: Visualization of trascription factor family grouped by biological function
20 months ago by
Alex Reynolds
35k
1
vote
0
replies
2.6k
views
Answer:
Answer: GFF to BED conversion
21 months ago by
Alex Reynolds
35k
2
votes
1
reply
1.1k
views
Answer:
Answer: Mapping chromosome location to gene ID
21 months ago by
Alex Reynolds
35k
0
votes
0
replies
780
views
Answer:
Answer: Comparing bed files for shifts and enlargements
21 months ago by
Alex Reynolds
35k
0
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0
replies
1.3k
views
Answer:
Answer: How to create bed file from list of variants with indels and bp values
22 months ago by
Alex Reynolds
35k
0
votes
1
reply
1.7k
views
Answer:
Answer: sliding windows over genome
22 months ago by
Alex Reynolds
35k
0
votes
0
replies
906
views
Answer:
Answer: "moving average" function for "coverage" signal in bed files?
22 months ago by
Alex Reynolds
35k
1
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0
replies
1.2k
views
Answer:
Answer: How to interpret similar motifs in Homer results
22 months ago by
Alex Reynolds
35k
0
votes
0
replies
1.3k
views
Answer:
Answer: Why the bed file not recognized as a bed file
23 months ago by
Alex Reynolds
35k
0
votes
1
reply
1.0k
views
Answer:
Answer: Circos plot
23 months ago by
Alex Reynolds
35k
0
votes
1
reply
867
views
Answer:
Answer: SARS-CoV-2 genome on NCBI website
23 months ago by
Alex Reynolds
35k
0
votes
0
replies
1.3k
views
Answer:
Answer: deeptools plotHeatMap - Convert bed files to gene list?
24 months ago by
Alex Reynolds
35k
1
vote
1
reply
843
views
Answer:
Answer: Find genes of interest in large unannotated genome files
2.0 years ago by
Alex Reynolds
35k
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