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Comment:
Comment: qualimap - bed file error - BED format error, there should be at least 6 fields.
26 days ago by
Alex Reynolds
34k
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1
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408
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Comment:
Comment: sliding windows over genome
6 weeks ago by
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Comment:
Comment: Can I successfully go from a bed file (narrowpeak) back to a bam file containing
6 weeks ago by
Alex Reynolds
34k
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4.5k
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Comment:
Comment: Finding Chip Seq Overlaps with Bed files
7 weeks ago by
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34k
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377
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Comment:
Comment: Why the bed file not recognized as a bed file
10 weeks ago by
Alex Reynolds
34k
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1
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270
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Comment:
Comment: deeptools plotHeatMap - Convert bed files to gene list?
3 months ago by
Alex Reynolds
34k
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0
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374
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Comment:
Comment: Find genes of interest in large unannotated genome files
3 months ago by
Alex Reynolds
34k
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365
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Comment:
Comment: Determining the transcription factor activators for a particular gene
4 months ago by
Alex Reynolds
34k
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315
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Comment: Non-zero return code 127 from
4 months ago by
Alex Reynolds
34k
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546
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Comment: Mince a vcf into n bins of a given range
5 months ago by
Alex Reynolds
34k
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2.0k
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Comment:
Comment: How to search dbSNP using a list of SNPs and retrieve Gene name (hgnc symbol if
6 months ago by
Alex Reynolds
34k
1
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1
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611
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Comment:
Comment: Distinguishing between ambiguously mapped reads in a split bamToBed file
6 months ago by
Alex Reynolds
34k
1
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975
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Comment:
Comment: To create a multi fasta file which contains each gene's exons
6 months ago by
Alex Reynolds
34k
1
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975
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Comment:
Comment: To create a multi fasta file which contains each gene's exons
6 months ago by
Alex Reynolds
34k
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533
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Comment:
Comment: Create junctions from Bed file for IGV visualization
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34k
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Comment:
Comment: Bioinformatics in Graviton2 AWS
7 months ago by
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34k
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34k
1
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Comment: How to infer the TSS from a gtf file
7 months ago by
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34k
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1
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772
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Comment: Create smallest set of k-mers using degenerate bases
7 months ago by
Alex Reynolds
34k
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0
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925
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Comment:
Comment: Calculation of gene coverage from BAM file
8 months ago by
Alex Reynolds
34k
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1
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925
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Comment:
Comment: Calculation of gene coverage from BAM file
8 months ago by
Alex Reynolds
34k
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820
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Comment:
Comment: Sliding window plot using Python
8 months ago by
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34k
1
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37k
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34k
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1.3k
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Comment:
Comment: Will a user #100000 get Tesla Model 3?
8 months ago by
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34k
3
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1.3k
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Comment:
Comment: Will a user #100000 get Tesla Model 3?
8 months ago by
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34k
1
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0
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3.9k
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Comment:
Comment: What is the most optimal way to count the nucleotide bases of each fastq file in
8 months ago by
Alex Reynolds
34k
0
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1
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612
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Comment:
Comment: adding Gene Name to my bed file
8 months ago by
Alex Reynolds
34k
0
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1
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1.2k
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Comment:
Comment: How to select a few TF binding site using JASPAR on UCSC
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34k
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Comment:
Comment: Pick Random regions inside genes
9 months ago by
Alex Reynolds
34k
0
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0
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552
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Comment:
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9 months ago by
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34k
1
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1
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1.1k
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Comment:
Comment: Genozip: A new compression tool for FASTQ, BAM, VCF and more
9 months ago by
Alex Reynolds
34k
0
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0
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2.1k
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Comment:
Comment: How to download BED file with all the fields?
9 months ago by
Alex Reynolds
34k
1
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1
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538
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Comment:
Comment: MEME suite compare motifs between species
10 months ago by
Alex Reynolds
34k
0
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1
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5.7k
views
Comment:
Comment: Get rsID for a list of SNPs in an entire GWAS sumstats file
10 months ago by
Alex Reynolds
34k
0
votes
0
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355
views
Comment:
Comment: Specifications for annotation names or symbols?
10 months ago by
Alex Reynolds
34k
1
vote
0
replies
1.0k
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Comment:
Comment: Bedtools - converting multiple bam files to bed
10 months ago by
Alex Reynolds
34k
1
vote
1
reply
2.0k
views
Comment:
Comment: How to search dbSNP using a list of SNPs and retrieve Gene name (hgnc symbol if
10 months ago by
Alex Reynolds
34k
0
votes
1
reply
110k
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Comment:
Comment: Extract Reads From A Bam File That Fall Within A Given Region
11 months ago by
Alex Reynolds
34k
0
votes
1
reply
110k
views
Comment:
Comment: Extract Reads From A Bam File That Fall Within A Given Region
11 months ago by
Alex Reynolds
34k
0
votes
1
reply
110k
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Comment:
Comment: Extract Reads From A Bam File That Fall Within A Given Region
11 months ago by
Alex Reynolds
34k
0
votes
1
reply
110k
views
Comment:
Comment: Extract Reads From A Bam File That Fall Within A Given Region
11 months ago by
Alex Reynolds
34k
0
votes
0
replies
573
views
Comment:
Comment: annotate sites with gene info
11 months ago by
Alex Reynolds
34k
1
vote
0
replies
14k
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Comment:
Comment: BEDOPS gtf2bed conversion error with Ensembl GTF
11 months ago by
Alex Reynolds
34k
0
votes
1
reply
573
views
Comment:
Comment: annotate sites with gene info
11 months ago by
Alex Reynolds
34k
0
votes
1
reply
1.1k
views
Comment:
Comment: Trouble getting BLAT to work
12 months ago by
Alex Reynolds
34k
0
votes
0
replies
882
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Comment:
Comment: Ensure identical output between platforms and operating systems
12 months ago by
Alex Reynolds
34k
0
votes
0
replies
882
views
Comment:
Comment: Ensure identical output between platforms and operating systems
12 months ago by
Alex Reynolds
34k
0
votes
0
replies
1.4k
views
Comment:
Comment: Trying to run FIMO from Meme suite using command line
12 months ago by
Alex Reynolds
34k
0
votes
1
reply
1.4k
views
Comment:
Comment: Trying to run FIMO from Meme suite using command line
12 months ago by
Alex Reynolds
34k
1
vote
0
replies
668
views
Comment:
Comment: How to find out TFBS motifs within 5'-UTR sequences
12 months ago by
Alex Reynolds
34k
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