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Comment: Comment: Extract Reads From A Bam File That Fall Within A Given Region
10 months ago by Alex Reynolds 34k
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107k
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Comment: Comment: Extract Reads From A Bam File That Fall Within A Given Region
10 months ago by Alex Reynolds 34k
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Answer: Answer: Use bioinformatics tool in iphone 7
10 months ago by Alex Reynolds 34k
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701
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Answer: Answer: homebrew Vs bioconda
10 months ago by Alex Reynolds 34k
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107k
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Comment: Comment: Extract Reads From A Bam File That Fall Within A Given Region
10 months ago by Alex Reynolds 34k
0
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1
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107k
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Comment: Comment: Extract Reads From A Bam File That Fall Within A Given Region
10 months ago by Alex Reynolds 34k
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549
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Comment: Comment: annotate sites with gene info
10 months ago by Alex Reynolds 34k
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13k
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Comment: Comment: BEDOPS gtf2bed conversion error with Ensembl GTF
10 months ago by Alex Reynolds 34k
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549
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Comment: Comment: annotate sites with gene info
10 months ago by Alex Reynolds 34k
2
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623
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Answer: Answer: Sum up value within a interval
10 months ago by Alex Reynolds 34k
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1.1k
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Comment: Comment: Trouble getting BLAT to work
10 months ago by Alex Reynolds 34k
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854
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Comment: Comment: Ensure identical output between platforms and operating systems
10 months ago by Alex Reynolds 34k
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854
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Comment: Comment: Ensure identical output between platforms and operating systems
10 months ago by Alex Reynolds 34k
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1.3k
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Comment: Comment: Trying to run FIMO from Meme suite using command line
10 months ago by Alex Reynolds 34k
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1.3k
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Comment: Comment: Trying to run FIMO from Meme suite using command line
10 months ago by Alex Reynolds 34k
2
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1
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1.3k
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Answer: Answer: Trying to run FIMO from Meme suite using command line
10 months ago by Alex Reynolds 34k
3
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548
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Answer: Answer: how to sort the rows of a file as a matrix?
10 months ago by Alex Reynolds 34k
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629
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Comment: Comment: How to find out TFBS motifs within 5'-UTR sequences
10 months ago by Alex Reynolds 34k
1
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1
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719
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Comment: Comment: KentUtils Installation Problem
10 months ago by Alex Reynolds 34k
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1
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719
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Answer: Answer: KentUtils Installation Problem
10 months ago by Alex Reynolds 34k
1
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1
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629
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Answer: Answer: How to find out TFBS motifs within 5'-UTR sequences
10 months ago by Alex Reynolds 34k
19
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19k
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Getting list of chromosome names from indexed BAM file
bam samtools
updated 10 months ago by ▴ 40 • written 8.1 years ago by 34k
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704
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Comment: Comment: convert Ensemble to HGNC symbols in a file with several columns
10 months ago by Alex Reynolds 34k
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1
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704
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Answer: Answer: convert Ensemble to HGNC symbols in a file with several columns
10 months ago by Alex Reynolds 34k
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538
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Comment: Comment: Divide the genome to vary lengths windows in R
11 months ago by Alex Reynolds 34k
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683
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Answer: Answer: How to search for genes 100Kb up and downstream of any genomic site
11 months ago by Alex Reynolds 34k
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716
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Answer: Answer: How to find overlapping coordinates of a gtf file
11 months ago by Alex Reynolds 34k
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326
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Comment: Comment: Interpret PCA as combinations of SNPs
11 months ago by Alex Reynolds 34k
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373
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Answer: Answer: getting a set of coverage/depth metrics for multiple regions
11 months ago by Alex Reynolds 34k
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3.8k
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Comment: Comment: k-mer finding and counting
11 months ago by Alex Reynolds 34k
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1
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517
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Answer: Answer: Getting peak (bed narrowPeak) from signals (Wig)
11 months ago by Alex Reynolds 34k
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0
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285
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Answer: Answer: Gradient Descent for gene degradation
11 months ago by Alex Reynolds 34k
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1
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354
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Answer: Answer: Best hit from BLAST for a particular genomic region
11 months ago by Alex Reynolds 34k
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437
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Answer: Answer: How to print the header of bed file and the lines that belong to chromosome 2
11 months ago by Alex Reynolds 34k
3
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522
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Answer: Answer: Bedops split bed coordinates with zero based half opened format
11 months ago by Alex Reynolds 34k
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0
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981
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Comment: Comment: Bash operations
11 months ago by Alex Reynolds 34k
4
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981
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Answer: Answer: Bash operations
12 months ago by Alex Reynolds 34k
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1
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2.2k
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Comment: Comment: specific k-mer count in multi fasta file
12 months ago by Alex Reynolds 34k
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448
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Answer: Answer: NNNNNN in genomic file and promoter sequence
12 months ago by Alex Reynolds 34k
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536
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Comment: Comment: how to plot one-dimeson heatmap using R
12 months ago by Alex Reynolds 34k
1
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0
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891
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Answer: Answer: How to plot "Distribution of SNPs per Mbp"
12 months ago by Alex Reynolds 34k
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0
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1.9k
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Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
12 months ago by Alex Reynolds 34k
2
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1
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1.9k
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Answer: Answer: BED file: Find intervals that overlap a certain percentage and keep the longest
12 months ago by Alex Reynolds 34k
1
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2
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1.9k
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Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
12 months ago by Alex Reynolds 34k
1
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1
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1.0k
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Comment: Comment: How do I properly visualize ATAC seq data on UCSC browser
12 months ago by Alex Reynolds 34k
3
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1
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1.0k
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Answer: Answer: How do I properly visualize ATAC seq data on UCSC browser
12 months ago by Alex Reynolds 34k
1
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1
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1.9k
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Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
12 months ago by Alex Reynolds 34k
1
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1
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1.9k
views
Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
12 months ago by Alex Reynolds 34k
1
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1
reply
1.9k
views
Answer: Answer: BED file: Find intervals that overlap a certain percentage and keep the longest
12 months ago by Alex Reynolds 34k
1
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2
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409
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Comment: Comment: Trimming gene coding sequence for finding TFBS
12 months ago by Alex Reynolds 34k
2,777 results • Page 3 of 56
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