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Showing :
questions
345
votes
94
replies
251k
views
59 follow
Tools To Calculate Average Coverage For A Bam File?
coverage
bam
sequencing
updated 3 months ago by
GenoMax
146k • written 13.8 years ago by
Biomed
5.0k
124
votes
13
replies
180k
views
13 follow
How Can I Convert Bam To Sam?
bam
next-gen-sequencing
sam
updated 14 months ago by
Ram
44k • written 14.3 years ago by
Biomed
5.0k
2
votes
2
replies
3.0k
views
What Is The Best Tool To Detect Ibd In A Trio (Mom, Dad, Child)
snp
updated 4.9 years ago by
Charles Warden
8.3k • written 13.1 years ago by
Biomed
5.0k
42
votes
6
replies
26k
views
6 follow
Can You Please Tell Me Where I Find Information About .Fai File Format?
maf
gatk
updated 5.3 years ago by
John Marshall
3.1k • written 14.4 years ago by
Biomed
5.0k
9
votes
2
replies
2.7k
views
What would be the expected average coverage of a 384 multiplexed run on a Novaseq S4 flowcell?
novaseq
coverage
updated 5.9 years ago by
ATpoint
85k • written 5.9 years ago by
Biomed
5.0k
0
votes
2
replies
3.1k
views
Is it possible to multiplex mora than 384 samples on Novaseq 6000 for a very low pass (0.5-10x) WGS?
WGS
Novaseq
5.9 years ago by
Biomed
5.0k
8
votes
4
replies
4.0k
views
Dbsnp Genotypes Confusion
dbsnp
genotyping
updated 6.2 years ago by
Ram
44k • written 14.4 years ago by
Biomed
5.0k
5
votes
6
replies
2.3k
views
Is Clinvar the most comprehensive and reliable source of disease-causing genes and variants?
clinvar
disease-causing
genetic-disease
omim
6.3 years ago by
Biomed
5.0k
2
votes
1
reply
1.5k
views
Expired Illumina GSA chips
SNP
chip
GSA
6.3 years ago by
Biomed
5.0k
119
votes
25
replies
125k
views
12 follow
Where Can I Download Human Reference Genome In Fasta Format? Hgref.Fa File
human
fasta
sequence
bwa
updated 7.7 years ago by
Hajk-Georg Drost
▴ 170 • written 14.3 years ago by
Biomed
5.0k
12
votes
5
replies
3.0k
views
What Is A Good Computer Science Journal For The Non-Computer Scientist?
updated 7.9 years ago by
Biostar
20 • written 13.8 years ago by
Biomed
5.0k
3
votes
5
replies
2.3k
views
What are the resources to design the most comprehensive clinical SNP chip?
SNP
clinical
primary care
8.4 years ago by
Biomed
5.0k
17
votes
9
replies
14k
views
How Can I Get These Information About Bam Files?
bam
next-gen
sequencing
updated 8.4 years ago by
Biostar
20 • written 13.9 years ago by
Biomed
5.0k
13
votes
7
replies
5.6k
views
Export2Fastq Conversion
fastq
illumina
next-gen
sequencing
updated 8.6 years ago by
ajguerras
• 0 • written 14.3 years ago by
Biomed
5.0k
53
votes
16
replies
36k
views
14 follow
Dbsnp : Best Way To Obtain Data On Snps
dbsnp
updated 2.7 years ago by
Nance
▴ 10 • written 14.4 years ago by
Biomed
5.0k
3
votes
5
replies
4.6k
views
Pysam Snp Calling
updated 9.7 years ago by
Biostar
20 • written 13.4 years ago by
Biomed
5.0k
237
votes
45
replies
73k
views
34 follow
What Is The Best Pipeline For Human Whole Exome Sequencing?
next-gen
sequencing
illumina
exome
human
updated 13.4 years ago by
User 9126
▴ 50 • written 14.4 years ago by
Biomed
5.0k
8
votes
6
replies
5.1k
views
Haplotype Determination With Next-Gen Data In Nuclear Families
haplotype
next-gen
sequencing
updated 2.9 years ago by
Ram
44k • written 13.9 years ago by
Biomed
5.0k
23
votes
12
replies
7.7k
views
7 follow
Dbsnp132 1000Genomes Vcf File Info Field: Bitfield Structure
dbsnp
vcf
genome
updated 10.3 years ago by
cmdcolin
★ 4.0k • written 14.0 years ago by
Biomed
5.0k
20
votes
8
replies
6.2k
views
Baseline Configuration Of A Bioinformatics Server
server
updated 10.7 years ago by
Biostar
20 • written 14.5 years ago by
Biomed
5.0k
11
votes
5
replies
3.8k
views
Jumping To The Next Bed Coordinate In The Ucsc Genome Browser
ucsc
updated 10.8 years ago by
Biostar
20 • written 13.4 years ago by
Biomed
5.0k
50
votes
8
replies
15k
views
9 follow
Expression Databases For Human Genes
gene
updated 11.4 years ago by
Ali R. Vahdati
▴ 190 • written 13.9 years ago by
Biomed
5.0k
39
votes
13
replies
31k
views
10 follow
Human Exome Capture Library Coordinates Download
exome
agilent
next-gen
sequencing
updated 11.4 years ago by
John St. John
★ 1.2k • written 13.8 years ago by
Biomed
5.0k
3
votes
6
replies
4.3k
views
Conservation At Amino Acid Level
conservation
annotation
updated 12.4 years ago by
Leszek
4.2k • written 12.4 years ago by
Biomed
5.0k
2
votes
1
reply
3.0k
views
Functional Validation Of A 5' Utr Mutation
utr
updated 12.4 years ago by
JC
13k • written 12.4 years ago by
Biomed
5.0k
15
votes
6
replies
6.3k
views
I Need To Plot 73 Mutations On A Large Gene With >60 Exons
mutation
gene
plot
updated 12.5 years ago by
Obi Griffith
20k • written 12.5 years ago by
Biomed
5.0k
8
votes
7
replies
5.5k
views
Which Mappability Track To Use?
ucsc
updated 12.8 years ago by
Mikael Huss
4.8k • written 12.8 years ago by
Biomed
5.0k
5
votes
1
reply
2.8k
views
Why Do We Align Each Pair Set Separately In An Illumina Paired End Sequencing Study?
next-gen
sequencing
updated 12.8 years ago by
Swbarnes2
★ 1.6k • written 12.8 years ago by
Biomed
5.0k
6
votes
8
replies
7.2k
views
What Is The Best Program To Determine Structural Variation (Cnv) For Illumina Omniexpress Data?
cnv
illumina
structural
sv
updated 12.8 years ago by
liutao1986
• 0 • written 13.9 years ago by
Biomed
5.0k
23
votes
12
replies
7.5k
views
6 follow
Reasons Why A Region In The Human Genome May Get Bad Sequence/Alignment Using Illumina Platform?
illumina
next-gen
sequencing
updated 12.9 years ago by
Larry_Parnell
16k • written 12.9 years ago by
Biomed
5.0k
5
votes
5
replies
2.3k
views
Assembly For Rare Variants
snp
local
updated 13.1 years ago by
Lee Katz
★ 3.2k • written 13.1 years ago by
Biomed
5.0k
6
votes
14
replies
4.2k
views
Affy Data Into Illumina Genome Studio
affymetrix
illumina
updated 13.2 years ago by
Neilfws
49k • written 14.5 years ago by
Biomed
5.0k
8
votes
7
replies
3.4k
views
Macrogen Vs Complete Genomics
genome
sequencing
updated 13.2 years ago by
lh3
33k • written 13.4 years ago by
Biomed
5.0k
7
votes
1
reply
3.0k
views
What Are The Metrics To Determine The Quality Of A Whole Genome Sequence
genome
next-gen
sequencing
quality
updated 13.2 years ago by
Pablo
★ 1.9k • written 13.4 years ago by
Biomed
5.0k
4
votes
1
reply
3.4k
views
Detecting And Maping Balanced Translocations With Whole Genome Sequencing?
short
next-gen
sequencing
updated 13.2 years ago by
Sean Davis
27k • written 13.4 years ago by
Biomed
5.0k
1
vote
2
replies
5.0k
views
Liftover With Chr_Random Positions
liftover
chromosome
random
updated 13.3 years ago by
Jorge Amigo
14k • written 13.4 years ago by
Biomed
5.0k
14
votes
11
replies
4.9k
views
Chr_Random Positions
chromosome
random
exome
sequencing
variant
updated 13.3 years ago by
Ning-Yi Shao
▴ 390 • written 13.5 years ago by
Biomed
5.0k
10
votes
9
replies
4.5k
views
How To Predict Which Next Gen Variants Would Not Validate By Sanger
bam
samtools
exome
updated 13.3 years ago by
Bioinfosm
▴ 620 • written 13.3 years ago by
Biomed
5.0k
6
votes
8
replies
5.0k
views
Nextgene As An Alignment And Variant Calling Pipeline
bwa
samtools
exome
updated 13.4 years ago by
Leszek
4.2k • written 13.4 years ago by
Biomed
5.0k
15
votes
4
replies
5.8k
views
Variant Annotation - Which Transcript(S) Are The Best Representatives Of The Variant?
variant
variant
annotation
genetics
updated 13.4 years ago by
Sean Davis
27k • written 13.4 years ago by
Biomed
5.0k
12
votes
2
replies
4.2k
views
Is There A Biostar For Biology Questions?
meta
biostars
updated 21 months ago by
Ram
44k • written 13.4 years ago by
Biomed
5.0k
8
votes
2
replies
6.2k
views
What'S Are The Main Differences Between Seattleseq And Annovar?
annovar
updated 13.4 years ago by
Jorge Amigo
14k • written 13.4 years ago by
Biomed
5.0k
29
votes
19
replies
7.5k
views
6 follow
Reasons For Observing Non-Reference Allele In Everyone As Homozygous Genotype
hg
hg
human
updated 13.5 years ago by
Ryan Thompson
★ 3.6k • written 13.5 years ago by
Biomed
5.0k
26
votes
2
replies
6.1k
views
Multiple Entries With The Same Rs Number In Dbsnp131
snp
mapping
dbsnp
updated 13.7 years ago by
Jorge Amigo
14k • written 14.2 years ago by
Biomed
5.0k
10
votes
3
replies
4.4k
views
Genomic Change To Aa Change?
variant
sequence
updated 23 months ago by
Ram
44k • written 13.7 years ago by
Biomed
5.0k
22
votes
13
replies
6.5k
views
6 follow
I Need A List Of Bayesian Snp/Genotype Callers
snp
genotyping
next-gen
sequencing
updated 13.8 years ago by
bgulko2
▴ 10 • written 13.8 years ago by
Biomed
5.0k
9
votes
2
replies
3.2k
views
Snp Position Problem
dbsnp
position
snp
genome
ucsc
updated 13.8 years ago by
Mitch Skinner
▴ 660 • written 13.8 years ago by
Biomed
5.0k
13
votes
6
replies
4.1k
views
Navigating Public Data For A Variant / Variant Annotation
variant
annotation
updated 13.8 years ago by
Brad Chapman
9.7k • written 13.8 years ago by
Biomed
5.0k
13
votes
8
replies
8.5k
views
7 follow
Linkage With Whole Exome Data
exome
linkage
updated 13.8 years ago by
glyamamoto
• 0 • written 14.4 years ago by
Biomed
5.0k
11
votes
4
replies
3.2k
views
Ucsc Dbsnp131 Table Format
dbsnp
bed
ucsc
updated 13.8 years ago by
Stephane Plaisance
▴ 460 • written 14.2 years ago by
Biomed
5.0k
56 results • Page
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