User: fufuyou

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fufuyou90
Reputation:
90
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Trusted
Location:
United States
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1 day, 10 hours ago
Joined:
2 years, 3 months ago
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Posts by fufuyou

<prev • 52 results • page 1 of 6 • next >
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Comment: C: Best way to remove contaminants to get nuclear genome
... where do you get the chloroplast and mitchondria genome sequence? NCBI? Thanks, ...
written 11 weeks ago by fufuyou90
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Comment: C: gff file name replace!
... Hi Petr, I do not know why my file is not formation file. I submitted the same file before. The file should be formatted. Fuyou ...
written 9 months ago by fufuyou90
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Comment: C: gff file name replace!
... Hi Petr, Thanks. My gff file is: Contig11434 EVM gene 1449 5723 . - . ID=SGH012578-RA;Name=Contig11434.1; Contig11434 EVM mRNA 1449 5723 . - . ID=SGH012578-RA;Parent=SGH012578-RA;Name=Contig11434.1; Contig11434 EVM exon 1449 5723 . - . ID=Contig11434.1.1;Parent=SGH012578-RA; Contig11434 EVM CDS 1449 ...
written 9 months ago by fufuyou90
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(Closed) gff file name replace!
... Hi, This is my gff file. I want to change some names. I tried to write a code, but it does not work well. The file is : Contig11434 EVM gene 148504 151454 . + . ID=SGH012586-RA;Name=Contig11434.9; Contig11434 EVM mRNA 148504 151454 . + ...
assembly written 9 months ago by fufuyou90 • updated 9 months ago by Devon Ryan74k
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Comment: C: remove out short predict genes from gff file
... Thanks, My mean is if one gene, for example mrna0001, $5-$4 > 150 in mRNA line, I want to keep mRNA and exon line. If one gene, for example mrna0002, $5-$4 < 150 in mRNA line, I want to remove both mRNA and exon. I want to get the result is ctg123 . mRNA 1300 9000 . + . I ...
written 10 months ago by fufuyou90 • updated 10 months ago by genomax39k
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Comment: C: remove out short predict genes from gff file
... Thanks, But I think I should only do mRNA line. ...
written 10 months ago by fufuyou90
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Comment: C: remove out short predict genes from gff file
... Thanks. I am sorry about my quesition is not clear. My mean is that I have gotten a gff files based on some predict software. But I find some genes is so short. I want to remove out these short genes. For example, I hope all genes protein sequences is more than 50 aa using this gff files. Or all ge ...
written 10 months ago by fufuyou90 • updated 10 months ago by genomax39k
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Comment: C: remove out short predict genes from gff file
... Thanks. I think it is not the distance between begin and end. I think I want to know how to set a minimal value for protein sequence or CDS. fUYOU ...
written 10 months ago by fufuyou90
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remove out short predict genes from gff file
... Hi, How can I remove out short predict genes from gff file? Or how can I set a value for CDS or protein length? Thanks, Fuyou ...
genome written 10 months ago by fufuyou90 • updated 5 months ago by Biostar ♦♦ 20
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Comment: C: compare and merge two txt files.
... Thanks. It works well. Fuyou ...
written 17 months ago by fufuyou90

Latest awards to fufuyou

Popular Question 9 months ago, created a question with more than 1,000 views. For extract data from txt files
Popular Question 9 months ago, created a question with more than 1,000 views. For samtools error file
Popular Question 9 months ago, created a question with more than 1,000 views. For SSPACE assembling Genome!
Supporter 9 months ago, voted at least 25 times.
Popular Question 13 months ago, created a question with more than 1,000 views. For samtools error file

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