User: fufuyou

gravatar for fufuyou
fufuyou80
Reputation:
80
Status:
Trusted
Location:
United States
Last seen:
1 day, 20 hours ago
Joined:
1 year, 6 months ago
Email:
f******@gmail.com

Posts by fufuyou

<prev • 51 results • page 1 of 6 • next >
0
votes
0
answers
104
views
0
answers
Comment: C: gff file name replace!
... Hi Petr, I do not know why my file is not formation file. I submitted the same file before. The file should be formatted. Fuyou ...
written 2 days ago by fufuyou80
0
votes
0
answers
104
views
0
answers
Comment: C: gff file name replace!
... Hi Petr, Thanks. My gff file is: Contig11434 EVM gene 1449 5723 . - . ID=SGH012578-RA;Name=Contig11434.1; Contig11434 EVM mRNA 1449 5723 . - . ID=SGH012578-RA;Parent=SGH012578-RA;Name=Contig11434.1; Contig11434 EVM exon 1449 5723 . - . ID=Contig11434.1.1;Parent=SGH012578-RA; Contig11434 EVM CDS 1449 ...
written 2 days ago by fufuyou80
2
votes
0
answers
104
views
0
answers
(Closed) gff file name replace!
... Hi, This is my gff file. I want to change some names. I tried to write a code, but it does not work well. The file is : Contig11434 EVM gene 148504 151454 . + . ID=SGH012586-RA;Name=Contig11434.9; Contig11434 EVM mRNA 148504 151454 . + ...
assembly written 2 days ago by fufuyou80 • updated 2 days ago by Devon Ryan62k
0
votes
0
answers
98
views
0
answers
Comment: C: remove out short predict genes from gff file
... Thanks, My mean is if one gene, for example mrna0001, $5-$4 > 150 in mRNA line, I want to keep mRNA and exon line. If one gene, for example mrna0002, $5-$4 < 150 in mRNA line, I want to remove both mRNA and exon. I want to get the result is ctg123 . mRNA 1300 9000 . + . I ...
written 9 days ago by fufuyou80 • updated 9 days ago by genomax223k
0
votes
0
answers
98
views
0
answers
Comment: C: remove out short predict genes from gff file
... Thanks, But I think I should only do mRNA line. ...
written 9 days ago by fufuyou80
0
votes
0
answers
98
views
0
answers
Comment: C: remove out short predict genes from gff file
... Thanks. I am sorry about my quesition is not clear. My mean is that I have gotten a gff files based on some predict software. But I find some genes is so short. I want to remove out these short genes. For example, I hope all genes protein sequences is more than 50 aa using this gff files. Or all ge ...
written 9 days ago by fufuyou80 • updated 9 days ago by genomax223k
0
votes
0
answers
98
views
0
answers
Comment: C: remove out short predict genes from gff file
... Thanks. I think it is not the distance between begin and end. I think I want to know how to set a minimal value for protein sequence or CDS. fUYOU ...
written 10 days ago by fufuyou80
6
votes
0
answers
98
views
0
answers
remove out short predict genes from gff file
... Hi, How can I remove out short predict genes from gff file? Or how can I set a value for CDS or protein length? Thanks, Fuyou ...
genome written 10 days ago by fufuyou80 • updated 10 days ago by Petr Ponomarenko730
0
votes
3
answers
411
views
3
answers
Comment: C: compare and merge two txt files.
... Thanks. It works well. Fuyou ...
written 7 months ago by fufuyou80
1
vote
3
answers
411
views
3
answers
Comment: C: compare and merge two txt files.
... Thanks, It does not work. sort: multi-character tab `\\t' sort: multi-character tab `\\t' Fuyou ...
written 7 months ago by fufuyou80

Latest awards to fufuyou

Popular Question 3 months ago, created a question with more than 1,000 views. For samtools error file

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1736 users visited in the last hour