User: samuelmiver

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samuelmiver420
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420
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Location:
Centre for Genomic Regulation (Barcelona, Spain)
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Google Scholar Page
Last seen:
2 years, 2 months ago
Joined:
4 years, 5 months ago
Email:
s**********@gmail.com

Master in Bioinformatics student and (if possible) future computational biologist. My fields of interest include omics, data integration and modelling related with synthetic and systems biology.

Posts by samuelmiver

<prev • 48 results • page 1 of 5 • next >
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Answer: A: Software to predict peptide time-of-flight
... At the end I used this webservice: http://software.broadinstitute.org/cancer/software/genepattern/esppredictor 'The ESPPredictor module implements the enhanced signature peptide (ESP) predictor method developed by Fusaro et al. (2009). It provides a means of predicting, from sequence alone, which ...
written 2.2 years ago by samuelmiver420
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Software to predict peptide time-of-flight
... I am working with some Mass Spectrometry data comparing expected versus observed outcome. I was looking at the moment for a program to predict which is going to be the time-of-flight of a specific peptide based on its charge/mass; however, I have not been able to find any option at the literature. ...
mass spectrometry maldi written 2.4 years ago by samuelmiver420
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Answer: A: Documentation about Bio. Site.search_pwm method in BioPython
... Here you have a very well documented example in GitHub that uses the method you are looking for: [https://github.com/bigwiv/Biopython-cn/blob/master/en/chr14.rst][1] [1]: https://github.com/bigwiv/Biopython-cn/blob/master/en/chr14.rst ...
written 3.6 years ago by samuelmiver420
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Answer: A: Application of Genetic Algorithms in bioinformatics
... I assume you are looking for examples of application: [An adaptive genetic algorithm for selection of blood-based biomarkers for prediction of Alzheimer's disease progression][1] [Genetic algorithms applied to multi-class prediction for the analysis of gene expression data][2] [GenClust: A genet ...
written 3.6 years ago by samuelmiver420
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Approach to support expression of an annotation from RNASeq
... I have a set of new annotation candidates to be considered in a genome using data from proteomics. I would like to support them with data coming from RNA Sequencing data. My initial idea was to take all the trusted annotations and study its distribution in RPKM (population A) and the same for regi ...
expression rna-seq statistics written 3.8 years ago by samuelmiver420 • updated 3.8 years ago by natasha.sernova3.7k
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Answer: A: Reference Genome of Saccharomyces cerevisiae S288C.
... http://www.ncbi.nlm.nih.gov/genome/?term=Saccharomyces%20cerevisiae%20S288C to compare two genomes I really like ACT (Artemis Comparison Tool) http://www.sanger.ac.uk/science/tools/artemis-comparison-tool-act ...
written 4.2 years ago by samuelmiver420
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Comment: C: How to compare these distributions?
... The data is not normal. I have enough data to apply central limit theorem so I am currently subsampling and computing the mean 10000 times and doing the study with the distributions of means. ...
written 4.2 years ago by samuelmiver420
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Comment: C: How to compare these distributions?
... Thank you very much for your response! I will try the ideas you suggest. ...
written 4.2 years ago by samuelmiver420
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Comment: C: How to compare these distributions?
... Yes! That is correct, is a global comparison of growth for different bacterial populations exposed to two different conditions and data collected at 4 and 12 days. I don't have a time 0 but I have 2 replicas per time for each condition (2 conditions, 2 times, 2 replicas each one). The comparison tr ...
written 4.2 years ago by samuelmiver420 • updated 11 weeks ago by RamRS25k
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How to compare these distributions?
... I have two different data frames , one per condition, where each one of them has 3 columns: specie : a qualitative value population@4days : population calculated for that specie at 4 days population@12days : population calculated for that specie at 12 days Using basic calculations I have compute ...
growth distributions sequencing statistics written 4.3 years ago by samuelmiver420 • updated 4.2 years ago by TriS4.1k

Latest awards to samuelmiver

Scholar 2.2 years ago, created an answer that has been accepted. For A: Thesis Help: Dna Sequence using BLAST
Popular Question 3.5 years ago, created a question with more than 1,000 views. For RNASeq normalization using the expression values of rRNA
Teacher 3.5 years ago, created an answer with at least 3 up-votes. For A: Thesis Help: Dna Sequence using BLAST
Good Answer 4.3 years ago, created an answer that was upvoted at least 5 times. For C: What are the benefits and risks of releasing my very beta software with a short
Scholar 4.4 years ago, created an answer that has been accepted. For C: What are the benefits and risks of releasing my very beta software with a short
Scholar 4.4 years ago, created an answer that has been accepted. For A: Changing the record id in a FASTA file using BioPython
Scholar 4.4 years ago, created an answer that has been accepted. For A: Changing the record id in a FASTA file using BioPython
Teacher 4.4 years ago, created an answer with at least 3 up-votes. For A: Changing the record id in a FASTA file using BioPython
Scholar 4.5 years ago, created an answer that has been accepted. For A: Changing the record id in a FASTA file using BioPython
Teacher 4.5 years ago, created an answer with at least 3 up-votes. For A: Changing the record id in a FASTA file using BioPython
Autobiographer 4.5 years ago, has more than 80 characters in the information field of the user's profile.
Teacher 4.5 years ago, created an answer with at least 3 up-votes. For A: Changing the record id in a FASTA file using BioPython
Scholar 4.5 years ago, created an answer that has been accepted. For A: Changing the record id in a FASTA file using BioPython

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