User: bondcarbond

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Posts by bondcarbond

<prev • 4 results • page 1 of 1 • next >
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mitochondrial phylogenetic analysis with PCG
... Hi all, I have kind of a dumb question maybe, but if i want to performe a phylogenetic analysis with protein coding genes of mitochondrial genomes, should each gene length be equally long for the analysis or you can leave it as it is? for example cox1 1500bp cox1 1400bp cox1 1450bp   thanks for t ...
phylogenetic pcg written 2.1 years ago by bondcarbond0 • updated 2.1 years ago by h.mon9.0k
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What Quality Control software should i use?
... Hi all, I want to performe a quality control for illumina sequenced data and i found several softwares (FASTQC, FASTQCs, HTQC, prinseq, htseq-qa) that coud performe this task. I wanted to ask if anyone with expierence could recommend me one in specific. tahnks for the help! ...
ngs quality control written 2.1 years ago by bondcarbond0 • updated 2.1 years ago by thackl2.4k
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How to verify ORF Finder results
... Hi all, I sequenced the complete mitochondrial genome of a species and i annotated it using MITOS. Then i used ORF Finder to verify MITOS Annotation. My question is how to verify if ORF Finder prediction is right, because if i look at the sequence i can find start-stop codons before and after ORF F ...
mitochondria orf finder protein coding gene written 2.1 years ago by bondcarbond0 • updated 2.1 years ago by Michael Dondrup43k
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FastQC quality control graphics for publication?
... Hi all, I would like to know if the graphics provided by FastQC are good to be used for a publication or should i used another programm for quality control? thanks for the help   ...
quality control tool fastqc written 2.1 years ago by bondcarbond0 • updated 2.1 years ago by Matt Shirley7.9k

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