User: lookamrita

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lookamrita0
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Posts by lookamrita

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Comment: C: Best way to draw heatmap using Gfold deferentially expressed no replicate data
... Even though I have log2fc value, shall I use FPKM only. Please see the example values and columns in my file. This is how it looks like: Gene GFOLD(2) E-FDR log2fdc 1stRPKM 2ndRPKM 7SK 3.63629 1 2.7294 0.0064312 0.0753654 A2ML1 8.08695 1 7.09134 0.00184317 0.47231 AADAC 2.57739 1 2. ...
written 8 days ago by lookamrita0 • updated 8 days ago by h.mon25k
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Best way to draw heatmap using Gfold deferentially expressed no replicate data
... Hi, I have two sample (Control and Test) RNA seq data (Ref: Human) after analyzing the files using Star and GATK pipeline , I Have used Gfold to check the differential expression analysis. Now I have Gfold output file of differential expression analysis. I want to draw heatmap using it. There are 4 ...
R next-gen rna-seq written 8 days ago by lookamrita0
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Bisulfite sequencing analysis
... Hi, I am trying to analyse Whole genome bisulfite sequencing data of Rice, but it is having biological replicates in the samples, which tool is good for this. I am very new to this field and have heard about Bismark, which was for no replicated data. Please tell me about any tool to analyse replica ...
next-gen wgbs written 3.7 years ago by lookamrita0 • updated 3.7 years ago by Devon Ryan90k

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Popular Question 3.6 years ago, created a question with more than 1,000 views. For Bisulfite sequencing analysis

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