User: sid5427

sid5427 • 10

Reputation:: 10
Status:: New User
Location:: USA
Last seen:: 2 months, 1 week ago
Joined:: 3 years, 5 months ago
Email:: a*******@gmail.com

Posts by sid5427

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Comment: C: TCGA - finding Normal and Tumor samples for matching protein and rna-seq samples

... Thanks Kevin, I found the RPPA cbioportal datasets and was able to match their TCGA ids to their respective RNA-seq and miRNAseq data. However as you mentioned, since protein expression profiling was not the primary goal, and specifically referring back to literature for the tcga, it seems "normal" ...

written 3 months ago by sid5427 • 10

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TCGA - finding Normal and Tumor samples for matching protein and rna-seq samples

... Good day all, So I have been trying to retrieve RNA-seq, miRNA-seq and protein expression data from TCGA' GDC data portal. Unfortunately, I have been having some issues. I have read a number of previous posts here in biostars and other forums, but still having issues using the new GDC portal I hav ...

tcga rna-seq written 3 months ago by sid5427 • 10 • updated 4 weeks ago by Brawni • 90

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python module or package to work with agp files ?

... Hello, I was wondering if there are any python modules which can directly work with agp files ? Maybe which can extract coordinates for scaffolds or other features directly. Something perhaps like pysam ? Though I can do it using standard python libraries, I was curious to see if any such module e ...

python module agp written 3.5 years ago by sid5427 • 10

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