User: caritogandini

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Posts by caritogandini

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Comment: C: bam-readcube -d option is not working
... how i fix the actual source code? ...
written 10 months ago by caritogandini10
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bam-readcount -d option is not working
... Hi! I am analyzing bam files with more than 300,000 reads per site... But the maximum depth that the bam-readcount output reports is 8000. I saw a post from 2013 where the same problem was fixed. But i think the patch is not working in new versions. ...
bam-readcount written 10 months ago by caritogandini10 • updated 10 months ago by Devon Ryan73k
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Answer: A: How can I change the default path to which SRA files are downloaded?
... Check out this! https://github.com/ncbi/sra-tools/wiki/Toolkit-Configuration ...
written 10 months ago by caritogandini10
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Answer: A: Extract Fasta Sequences Sub Sets
... Hi, i've noticed that the post is old, but anyway here you have a solution using BioPerl module Bio::DB::Fasta. It works using a fasta file with all your sequences and a txt file with the exact id (tab) start (tab) stop. #!/usr/bin/perl -w use Bio::DB::Fasta; #Usage: extract_substring.pl file.fa ...
written 2.2 years ago by caritogandini10

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