Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
2
votes
1
reply
1.3k
views
Answer: Answer: PRSice-2 without Ref SNP ID
2.6 years ago by Lemire ▴ 940
3
votes
0
replies
1.5k
views
Answer: Answer: When running pca with GCTA, why are there the same number of eigenvalues as the
2.6 years ago by Lemire ▴ 940
1
vote
0
replies
767
views
Answer: Answer: normality assumption for GWAS QT
2.7 years ago by Lemire ▴ 940
2
votes
1
reply
1.2k
views
Answer: Answer: GWASpower calculation
2.7 years ago by Lemire ▴ 940
1
vote
1
reply
2.0k
views
Answer: Answer: SNP Pruning Through PCA
2.7 years ago by Lemire ▴ 940
2
votes
0
replies
1.7k
views
Answer: Answer: Why do I get a big log fold change but small mean change in b value when plottin
2.7 years ago by Lemire ▴ 940
1
vote
0
replies
2.3k
views
Answer: Answer: How do I log into this ftp server and look around?
2.7 years ago by Lemire ▴ 940
0
votes
1
reply
834
views
Answer: Answer: alternatives to replication for GWAS
2.8 years ago by Lemire ▴ 940
0
votes
0
replies
1.0k
views
Answer: Answer: How can I do hypothesis test for continuous dependent variable and two categoric
2.8 years ago by Lemire ▴ 940
3
votes
1
reply
1.3k
views
Answer: Answer: Very high Beta coefficients in --glm output in plink2
2.8 years ago by Lemire ▴ 940
2
votes
0
replies
2.5k
views
Answer: Answer: GCTA make GRM error contains illegal chr number
2.8 years ago by Lemire ▴ 940
0
votes
0
replies
2.1k
views
Answer: Answer: Correcting for multiple testing: 12 multiple regressions, with several covariate
2.9 years ago by Lemire ▴ 940
1
vote
0
replies
1.2k
views
Answer: Answer: PLINK Clumping d-prime or r2?
2.9 years ago by Lemire ▴ 940
2
votes
1
reply
3.1k
views
Answer: Answer: How to produce a heatmap by keeping the original data and a log color scale?
3.0 years ago by Lemire ▴ 940
0
votes
0
replies
1.4k
views
Answer: Answer: How to find the standard error when the GWAS summary data does not provide?
3.0 years ago by Lemire ▴ 940
0
votes
0
replies
2.3k
views
Answer: Answer: How to connect HLA alleles with rsID?
3.0 years ago by Lemire ▴ 940
0
votes
1
reply
1.3k
views
Answer: Answer: How to produce overlapping QQ-plot from GWAS results?
3.0 years ago by Lemire ▴ 940
0
votes
1
reply
3.4k
views
Answer: A: GT 2/3, or 3/3 or 2/2 in vcf
4.0 years ago by Lemire ▴ 940
1
vote
0
replies
848
views
Answer: A: Adding dosage for a SNP as a covariate to a phenotype file
4.0 years ago by Lemire ▴ 940
0
votes
1
reply
3.6k
views
Answer: A: IDAT to VCF conversion
4.0 years ago by Lemire ▴ 940
2
votes
1
reply
2.6k
views
Answer: A: Meta-Analysis effect size is not in the same direction as GWAS effect sizes.
4.1 years ago by Lemire ▴ 940
0
votes
0
replies
1.2k
views
Answer: A: GCTA tool for case-control association analysis
4.2 years ago by Lemire ▴ 940
1
vote
1
reply
739
views
Answer: A: Variant association analysis with both related and unrelated individuals
4.2 years ago by Lemire ▴ 940
3
votes
0
replies
6.3k
views
Answer: A: IGV not showing the variants detected by GATK and Varscan
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 940
1
vote
2
replies
3.1k
views
Answer: A: LOD score of a single genotype
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 940
0
votes
0
replies
2.9k
views
Answer: A: Armitage's trend test for the 2x3 genotype table
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 940
0
votes
1
reply
15k
views
Answer: A: BWA mem how to know if a read is mapped uniquely?
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 940
3
votes
0
replies
1.8k
views
Answer: A: Non A T G C base in RefSeq zebrafish mRNA sequence
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 940
0
votes
0
replies
3.0k
views
Answer: A: p value with age and sex covariates in linear model in plink
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 940
2
votes
0
replies
3.4k
views
Answer: A: Looking for clean list of gene names for UCSC's HG19
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 940
1
vote
0
replies
8.0k
views
Answer: A: trim_galore and cutadapt to paired-end DNA sequencing
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 940
4
votes
2
replies
1.6k
views
Answer: A: logistic regression using HLA alllelic data
4.4 years ago by Lemire ▴ 940
1
vote
1
reply
7.5k
views
Answer: A: Impute presence of HLA-B27 antigen in individual genome
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 940
1
vote
1
reply
2.3k
views
Answer: A: BWA parameters control output
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 940
2
votes
0
replies
5.3k
views
Answer: A: How to download dbGaP CF Genotype-Tissue Expression Project (GTEx) data set
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 940
6
votes
2
replies
6.8k
views
Answer: A: How to make Q-Q plots for different models at a single chart using R?
4.4 years ago by Lemire ▴ 940
2
votes
0
replies
6.0k
views
Answer: A: DESeq PCA plot and edgeR MDS plot
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 940
0
votes
1
reply
2.0k
views
Answer: A: Normalization of Affymetrix data
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 940
1
vote
1
reply
3.4k
views
Answer: A: association test using plink
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 940
0
votes
0
replies
862
views
Answer: A: GWAS in mixed populations
4.4 years ago by Lemire ▴ 940
4
votes
1
reply
32k
views
Answer: A: Bioconductor : Setting local install directory for packages
updated 4.4 years ago by 43k • written 8.6 years ago by ▴ 940
0
votes
0
replies
711
views
Answer: A: Estimating heritability of a trait from data containing siblings
4.6 years ago by Lemire ▴ 940
2
votes
0
replies
789
views
Answer: A: Regression models on genetic data
4.7 years ago by Lemire ▴ 940
0
votes
1
reply
1.5k
views
Answer: A: Infinium MethylationEPIC BeadChip probes with cross-hybridisation potential
5.0 years ago by Lemire ▴ 940
3
votes
1
reply
4.1k
views
Answer: A: Whole exome sequencing data, rare variants and QQ-plots
updated 5.6 years ago by 11k • written 7.9 years ago by ▴ 940
1
vote
0
replies
3.1k
views
Answer: A: Is okay to apply ANOVA to Log2 transformed data ?
7.5 years ago by Lemire ▴ 940
4
votes
1
reply
4.0k
views
Answer: A: Bioinformatics analyses hall of shame
8.0 years ago by Lemire ▴ 940
2
votes
2
replies
1.8k
views
Answer: A: How to Assess Paired Sample Data from WES
8.0 years ago by Lemire ▴ 940
1
vote
0
replies
1.7k
views
Answer: A: Why are there too many mutations in controls, but not in tumour?
8.1 years ago by Lemire ▴ 940
1
vote
1
reply
2.2k
views
Answer: A: Enrichment analysis using a random distribution for mean and standard deviation
8.5 years ago by Lemire ▴ 940
52 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6