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Comment: C: Correct reference for Platinum Genomes?
4.2 years ago by Len Trigg ★ 1.6k
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1
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4.4k
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Comment: C: Why do people not call normal and tumor variant separately for somatic mutation
updated 4.3 years ago by 43k • written 8.2 years ago by ★ 1.6k
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Comment: C: VCF Record Question
updated 4.4 years ago by 43k • written 8.7 years ago by ★ 1.6k
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3.1k
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Comment: C: How to discover new mutations in a derived strain relative to a reference genome
updated 4.4 years ago by 43k • written 8.7 years ago by ★ 1.6k
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Comment: C: SNP discovery at ambiguous positions - how to keep them and get relevant result
updated 4.6 years ago by 43k • written 8.8 years ago by ★ 1.6k
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1
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3.0k
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Comment: C: VCF - what are overlapping variants?
4.8 years ago by Len Trigg ★ 1.6k
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2.1k
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Comment: C: why is variant calling difficult?
5.2 years ago by Len Trigg ★ 1.6k
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24k
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Comment: C: intersect VCF files
updated 5.6 years ago by 43k • written 6.4 years ago by ★ 1.6k
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2.4k
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Comment: C: Constructing a mean ROC curve based on 5 iterations
5.8 years ago by Len Trigg ★ 1.6k
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7.5k
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Comment: C: compare SV results across samples - Manta, Delly
5.9 years ago by Len Trigg ★ 1.6k
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7.5k
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Comment: C: compare SV results across samples - Manta, Delly
5.9 years ago by Len Trigg ★ 1.6k
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12k
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Comment: C: MAF vs VAF
6.1 years ago by Len Trigg ★ 1.6k
1
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1
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3.8k
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Comment: C: Can you assume variants not in VCF are all monomorphic for the reference allele?
6.1 years ago by Len Trigg ★ 1.6k
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0
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2.2k
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Comment: C: Strategies to call variants from a cancer sample
6.4 years ago by Len Trigg ★ 1.6k
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1
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7.9k
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Comment: C: Edditing headers from a .vcf.gz file
6.4 years ago by Len Trigg ★ 1.6k
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2
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1.5k
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Comment: C: Fasted method to genotype given SNPs from NGS data
6.4 years ago by Len Trigg ★ 1.6k
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3.4k
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Comment: C: phasing variants to find de novos
6.4 years ago by Len Trigg ★ 1.6k
4
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1
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3.4k
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Comment: C: phasing variants to find de novos
6.5 years ago by Len Trigg ★ 1.6k
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3.4k
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Comment: C: phasing variants to find de novos
6.5 years ago by Len Trigg ★ 1.6k
1
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1
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2.5k
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Comment: C: Do multiple SNPs exist in same chromosome to be called allele?
6.6 years ago by Len Trigg ★ 1.6k
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3.9k
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Comment: C: Correct way of merging samples for father, mother, child trio variant calling
6.8 years ago by Len Trigg ★ 1.6k
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0
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7.5k
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Comment: C: VCF Files: Help on 0/1 1/1 0/0 1/1 | vs / (phased & unphased
7.1 years ago by Len Trigg ★ 1.6k
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1
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15k
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Comment: C: Split a VCF file into individual sample files
7.1 years ago by Len Trigg ★ 1.6k
1
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1
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24k
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Comment: C: intersect VCF files
7.3 years ago by Len Trigg ★ 1.6k
1
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1
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5.1k
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Comment: C: Genotype representation for male chromosome X and Y
7.7 years ago by Len Trigg ★ 1.6k
1
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1
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4.0k
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Comment: C: how to add pedigree info into VCF
8.1 years ago by Len Trigg ★ 1.6k
2
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1
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4.0k
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Comment: C: how to add pedigree info into VCF
8.1 years ago by Len Trigg ★ 1.6k
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1
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2.1k
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Comment: C: about the use of varscan, somaticsnipper and samtools
8.1 years ago by Len Trigg ★ 1.6k
3
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8.7k
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Comment: C: fastq compression tools of choice
8.6 years ago by Len Trigg ★ 1.6k
1
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1
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6.4k
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Comment: Comment: Substitution error rate and indel error rate from BAM file
updated 16 months ago by 43k • written 8.8 years ago by ★ 1.6k
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7.0k
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Comment: C: Modifying fasta file based on vcf information
8.8 years ago by Len Trigg ★ 1.6k
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2.7k
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Comment: Comment: The CIGAR '=' op for 'sequence match' in SAM - how and why?
updated 15 months ago by 43k • written 8.9 years ago by ★ 1.6k
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1
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4.1k
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Comment: Comment: How to identify Denovo Mutations in the child compared with parents?
updated 14 months ago by 43k • written 9.0 years ago by ★ 1.6k
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1.8k
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Comment: C: get a set of reliable SNPs when knowing parent and child relationship
9.1 years ago by Len Trigg ★ 1.6k
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0
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8.8k
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Comment: Comment: Comparing Genotypes from NA12878 to that of her parents (NA12891 and NA12892)
updated 23 months ago by 43k • written 9.1 years ago by ★ 1.6k
5
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1
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7.4k
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Comment: Comment: VCF header line counting
updated 24 months ago by 43k • written 9.2 years ago by ★ 1.6k
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0
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3.2k
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Comment: C: Macrogen Vs Complete Genomics
12.8 years ago by Len Trigg ★ 1.6k
37 results • Page 1 of 1
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