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24k
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Comment: C: intersect VCF files
7.3 years ago by Len Trigg ★ 1.6k
2
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1
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2.2k
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Answer: A: GA4GH hap.py understanding
7.4 years ago by Len Trigg ★ 1.6k
10
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0
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20k
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Answer: A: Best way to compare two samples in a VCF file
7.4 years ago by Len Trigg ★ 1.6k
1
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1
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5.1k
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Comment: C: Genotype representation for male chromosome X and Y
7.7 years ago by Len Trigg ★ 1.6k
2
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1
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3.3k
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Answer: A: Non-cancer somatic mutation calling
7.9 years ago by Len Trigg ★ 1.6k
5
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0
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5.2k
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Answer: A: How Does Left-Alignment Work For Indels? Does It Address All Complicated Issues
7.9 years ago by Len Trigg ★ 1.6k
2
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0
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2.9k
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Answer: A: How is QUAL score calculated in multigenome VCF file?
8.0 years ago by Len Trigg ★ 1.6k
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1
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4.0k
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Comment: C: how to add pedigree info into VCF
8.1 years ago by Len Trigg ★ 1.6k
2
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1
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4.0k
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Comment: C: how to add pedigree info into VCF
8.1 years ago by Len Trigg ★ 1.6k
2
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0
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5.3k
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Answer: A: MuTect2's variants missing QUAL score
8.1 years ago by Len Trigg ★ 1.6k
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1
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2.1k
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Comment: C: about the use of varscan, somaticsnipper and samtools
8.1 years ago by Len Trigg ★ 1.6k
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0
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4.0k
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Answer: A: mapping metagenomics samples to multiple references genome
8.5 years ago by Len Trigg ★ 1.6k
1
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1
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2.3k
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Answer: Answer: indel position in repetitive regions
updated 20 months ago by 43k • written 8.5 years ago by ★ 1.6k
3
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0
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8.7k
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Comment: C: fastq compression tools of choice
8.7 years ago by Len Trigg ★ 1.6k
0
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0
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1.9k
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Answer: Answer: Convert reads alginment results of NGS metagenomic sample into abundance score
updated 19 months ago by 43k • written 8.7 years ago by ★ 1.6k
1
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0
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1.6k
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Answer: Answer: Theoretical genome sequence
updated 18 months ago by 43k • written 8.7 years ago by ★ 1.6k
13
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1
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24k
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Answer: Answer: Variant call format (VCF) file, how to get statistics per sample?
updated 18 months ago by 43k • written 8.7 years ago by ★ 1.6k
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0
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4.5k
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Answer: Answer: VCF genotype generator
updated 18 months ago by 43k • written 8.7 years ago by ★ 1.6k
2
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0
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1.6k
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Answer: Answer: Need recommendations for Family aware Variant/indel caller for WGS data
updated 18 months ago by 43k • written 8.7 years ago by ★ 1.6k
1
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0
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8.7k
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Answer: Answer: randomly shuffle BAM file
updated 18 months ago by 43k • written 8.8 years ago by ★ 1.6k
0
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0
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6.9k
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Answer: A: How to align DNA reads against a database of protein references
8.8 years ago by Len Trigg ★ 1.6k
1
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1
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6.5k
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Comment: Comment: Substitution error rate and indel error rate from BAM file
updated 16 months ago by 43k • written 8.8 years ago by ★ 1.6k
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0
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7.0k
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Comment: C: Modifying fasta file based on vcf information
8.9 years ago by Len Trigg ★ 1.6k
1
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0
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2.5k
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Answer: Answer: Sensitivity of variant calling
updated 16 months ago by 43k • written 8.9 years ago by ★ 1.6k
1
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0
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6.6k
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Answer: Answer: How to handle chr Y data in BAM files from exome sequencing of human females
updated 16 months ago by 43k • written 8.9 years ago by ★ 1.6k
2
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0
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1.9k
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Answer: Answer: GATK creating hs_err_pid.log file
updated 15 months ago by 43k • written 8.9 years ago by ★ 1.6k
0
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0
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2.8k
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Comment: Comment: The CIGAR '=' op for 'sequence match' in SAM - how and why?
updated 15 months ago by 43k • written 8.9 years ago by ★ 1.6k
1
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0
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5.2k
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Answer: Answer: SNP calling pipeline - testing different programs
updated 14 months ago by 43k • written 9.0 years ago by ★ 1.6k
0
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1
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4.1k
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Comment: Comment: How to identify Denovo Mutations in the child compared with parents?
updated 14 months ago by 43k • written 9.0 years ago by ★ 1.6k
0
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1
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4.1k
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Answer: Answer: How to identify Denovo Mutations in the child compared with parents?
updated 14 months ago by 43k • written 9.0 years ago by ★ 1.6k
1
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0
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5.6k
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Answer: Answer: What are acceptable SNP QUAL and GQ thresholds to filter on?
updated 14 months ago by 43k • written 9.0 years ago by ★ 1.6k
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0
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4.7k
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Answer: Answer: Generate genotype specific FASTA sequences from VCF file and reference sequence
updated 21 months ago by 43k • written 9.0 years ago by ★ 1.6k
2
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0
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4.7k
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Answer: Answer: Multiple VCF file comparision
updated 21 months ago by 43k • written 9.0 years ago by ★ 1.6k
1
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1
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15k
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Answer: Answer: Split a VCF file into individual sample files
updated 22 months ago by 43k • written 9.0 years ago by ★ 1.6k
0
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0
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2.9k
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Answer: Answer: Which Somatic SNP Callers to Benchmark?
updated 22 months ago by 43k • written 9.0 years ago by ★ 1.6k
1
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0
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4.6k
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Answer: Answer: An Alternative To Blastx With Speed Similar To Bowtie
updated 22 months ago by 43k • written 9.1 years ago by ★ 1.6k
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0
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1.8k
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Comment: C: get a set of reliable SNPs when knowing parent and child relationship
9.1 years ago by Len Trigg ★ 1.6k
1
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0
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2.0k
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Answer: Answer: SNPs from bam file with no ref
updated 23 months ago by 43k • written 9.1 years ago by ★ 1.6k
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0
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1.8k
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Answer: Answer: get a set of reliable SNPs when knowing parent and child relationship
updated 23 months ago by 43k • written 9.1 years ago by ★ 1.6k
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0
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8.8k
views
Comment: Comment: Comparing Genotypes from NA12878 to that of her parents (NA12891 and NA12892)
updated 23 months ago by 43k • written 9.1 years ago by ★ 1.6k
2
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1
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8.8k
views
Answer: Answer: Comparing Genotypes from NA12878 to that of her parents (NA12891 and NA12892)
updated 23 months ago by 43k • written 9.1 years ago by ★ 1.6k
0
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2
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5.2k
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Answer: Answer: Questions on tagging low qual variants and DP filtering on a joint VCF (generate
updated 24 months ago by 43k • written 9.2 years ago by ★ 1.6k
5
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1
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7.4k
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Comment: Comment: VCF header line counting
updated 24 months ago by 43k • written 9.2 years ago by ★ 1.6k
1
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1
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2.4k
views
Answer: Answer: Tool to obtain phased genotypes for family quartet?
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 1.6k
1
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0
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12k
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Answer: Answer: How to calculate organism relative abundance from Illumina metagenomic data?
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 1.6k
1
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0
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23k
views
Answer: A: Is There A List Of Top N Bioinformatics Or Genome Software Company Or Studio ?
12.8 years ago by Len Trigg ★ 1.6k
1
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0
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6.4k
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Answer: Answer: Has Anyone Had Experience With Complete Genomics Sequencing And Data Analysis?
updated 3.0 years ago by 43k • written 12.9 years ago by ★ 1.6k
0
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0
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3.2k
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Comment: C: Macrogen Vs Complete Genomics
12.9 years ago by Len Trigg ★ 1.6k
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