User: le.marcorin

gravatar for le.marcorin
Reputation:
0
Status:
New User
Last seen:
1 year, 6 months ago
Joined:
4 years, 5 months ago
Email:
l**********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by le.marcorin

<prev • 3 results • page 1 of 1 • next >
0
votes
1
answer
924
views
1
answer
allele count in bam files
... Hi! I'm trying to get the allele count for some snps in my bam files. The variant calling was done by haplotypeCaller. The allele count in the output doesn't represent the real number of reads I have in my bam file, whitch is what I want. I tried with bcftools mpileup, but the output only shows ge ...
alignment sequence snp written 18 months ago by le.marcorin0 • updated 18 months ago by h.mon29k
0
votes
7
answers
8.7k
views
7
answers
Comment: C: Variant Function Prediction
... I am using Haploreg to study some non-coding regions but I 'm having problems understanding those values in the 'Regulatory motifs altered' area in the end of the page. Could you help me? I already read the paper from Kheradpour and Kellis, 2013, but it didn't help ...
written 3.4 years ago by le.marcorin0
4
votes
2
answers
8.4k
views
2
answers
What are soft clipped reads??
... Hi! I'm working with Illumina Miseq reads and i'm having some trouble with variant calling. I used cutadapt for trimming adapters, bwa for alignment and GATK HaplotypeCaller (-dontUseSoftClippedBases) for variant calling. I also used vcfx (http://www.castelli-lab.net/apps/apps_vcfx.php) to better c ...
next-gen alignment sequencing written 3.8 years ago by le.marcorin0 • updated 3.8 years ago by John12k

Latest awards to le.marcorin

Great Question 3.3 years ago, created a question with more than 5,000 views. For What are soft clipped reads??
Popular Question 3.3 years ago, created a question with more than 1,000 views. For What are soft clipped reads??

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1773 users visited in the last hour