User: stackf01

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stackf0120
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New User
Location:
Mauritius
Last seen:
4 years, 12 months ago
Joined:
5 years ago
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Posts by stackf01

<prev • 23 results • page 1 of 3 • next >
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Retrieving files from Interpro
... Hello to all. Can someone enlighten me on how to differentiate which ones are domains and which ones are families from InterPro in the ParentChildTree.txt ? I want to know super-family, family, and sub-family and same for domains. I want to parse all this data in a MySQL table. Please help.. Thank ...
domain interpro family written 5.0 years ago by stackf0120 • updated 5.0 years ago by Biostar ♦♦ 20
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Comment: C: Gene Ontology & Interpro
... For the UniProt, how do I which one is the parent node of the ontology ? ...
written 5.0 years ago by stackf0120
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Comment: C: Gene Ontology mapping with biogrid, uniprot, PDB, Interpro and NCBI Gene & Taxon
... Help please ...
written 5.0 years ago by stackf0120
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Comment: C: Gene Ontology mapping with biogrid, uniprot, PDB, Interpro and NCBI Gene & Taxon
... Help please ...
written 5.0 years ago by stackf0120
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Gene Ontology mapping with biogrid, uniprot, PDB, Interpro and NCBI Gene & Taxonomy
... Hello guys. I have downloaded biogrid​ ppi data and integrate same in a MySQL database. I have also downloaded UniProt and others will be downloaded and integrated in a MySQL database. My question is that how do I map all this data with all the databases as mentioned in the post title. By which ID ...
pdb gene ontology biogrid written 5.0 years ago by stackf0120
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Gene Ontology & Interpro
... Hello guys. How do I download the complete data sets for protein entries containing information about the GO (such as Biological Process, Molecular Function, Cellular Component) ? I want to download all this data sets and integrate it in a MySQL db. Furthermore, second question is that how do I com ...
gene interpro; written 5.0 years ago by stackf0120 • updated 5.0 years ago by me720
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Comment: C: Generating PPI Networks from BioGRID
... I have downloaded the psi xml file from BioGRID. How do I integrate this data into a MySQL table? ...
written 5.0 years ago by stackf0120
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Comment: C: Generating PPI Networks from BioGRID
... What is shortlabel ? ...
written 5.0 years ago by stackf0120
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Comment: C: Downloading all pdb files from RCSB
... Where do I execute this? Command Prompt? ...
written 5.0 years ago by stackf0120
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Downloading all pdb files from RCSB
... Hello. Is there any way to download all the proteins 3D structure from rcsb? I want to download all in the pdb format. Help please​. URGENT ...
pdb written 5.0 years ago by stackf0120 • updated 3 days ago by ShiTianyi20010

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