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Showing :
answers
2
votes
1
reply
521
views
Answer:
Answer: Weird Fragment Length distribution multiQC
28 days ago by
Carlo Yague
8.6k
3
votes
0
replies
271
views
Answer:
Answer: How is strandedness preserved with PCR (DNA/RNA-seq)
28 days ago by
Carlo Yague
8.6k
1
vote
1
reply
520
views
Answer:
Answer: How to convert raw Nanopore R9 fast5 files to fastq files ?
28 days ago by
Carlo Yague
8.6k
1
vote
1
reply
803
views
Answer:
Answer: How to find coordinates of TSS from 5pUTR and TTS from 3pUTR in transcriptome/ m
10 months ago by
Carlo Yague
8.6k
1
vote
2
replies
950
views
Answer:
Answer: feature count command error
11 months ago by
Carlo Yague
8.6k
1
vote
1
reply
557
views
Answer:
Answer: RPKM normalization
11 months ago by
Carlo Yague
8.6k
3
votes
1
reply
598
views
Answer:
Answer: ERCC normalization within DESeq2
11 months ago by
Carlo Yague
8.6k
1
vote
1
reply
1.1k
views
Answer:
Answer: tophat2 installation error
11 months ago by
Carlo Yague
8.6k
0
votes
1
reply
1.3k
views
Answer:
Answer: extract gene coordinates and TSS from gene list
12 months ago by
Carlo Yague
8.6k
0
votes
1
reply
488
views
Answer:
Answer: DESeq2 replicates in time course data
13 months ago by
Carlo Yague
8.6k
1
vote
1
reply
826
views
Answer:
Answer: I have a question in Size-selection(SPRI) in ChIP-seq library preparation
18 months ago by
Carlo Yague
8.6k
3
votes
0
replies
570
views
Answer:
Answer: bedtools
19 months ago by
Carlo Yague
8.6k
1
vote
1
reply
702
views
Answer:
Answer: Problem with extracting reverse-reverse read pairs
19 months ago by
Carlo Yague
8.6k
0
votes
0
replies
2.1k
views
Answer:
Answer: Supplementary alignments in BAM-file
21 months ago by
Carlo Yague
8.6k
1
vote
2
replies
727
views
Answer:
Answer: finding coverage of bam file
22 months ago by
Carlo Yague
8.6k
0
votes
1
reply
592
views
Answer:
Answer: [bash] No result file is created after hisat2
22 months ago by
Carlo Yague
8.6k
1
vote
1
reply
1.5k
views
Answer:
Answer: How to conclude two genome sequences have the same origin?
23 months ago by
Carlo Yague
8.6k
2
votes
0
replies
486
views
Answer:
Answer: Is it possible to find the mutation in RNA-seq reads?
23 months ago by
Carlo Yague
8.6k
3
votes
1
reply
2.5k
views
Answer:
Answer: Genes encoded on both strands of DNA?
23 months ago by
Carlo Yague
8.6k
8
votes
1
reply
2.8k
views
Answer:
Answer: Bowtie2 and Hisat2 which tool should I use?
23 months ago by
Carlo Yague
8.6k
2
votes
1
reply
770
views
Answer:
Answer: Remove observations from txt file
23 months ago by
Carlo Yague
8.6k
0
votes
0
replies
528
views
Answer:
Answer: edgeR comparison of 2 samples
23 months ago by
Carlo Yague
8.6k
3
votes
1
reply
1.6k
views
Answer:
Answer: lncRNA analysis tutorial
24 months ago by
Carlo Yague
8.6k
3
votes
1
reply
594
views
Answer:
Answer: Distribution of Violin Plot
24 months ago by
Carlo Yague
8.6k
2
votes
1
reply
1.1k
views
Answer:
Answer: The clean reads with failed per base sequence content in fastQC
24 months ago by
Carlo Yague
8.6k
0
votes
1
reply
2.1k
views
Answer:
Answer: Bowtie: How do I map files to reference genome?
24 months ago by
Carlo Yague
8.6k
0
votes
1
reply
627
views
Answer:
Answer: Read depth per base DNA seq
24 months ago by
Carlo Yague
8.6k
0
votes
0
replies
648
views
Answer:
Answer: 3' mRNAseq Bioinformatic Considerations (bulk RNAseq)
2.1 years ago by
Carlo Yague
8.6k
3
votes
1
reply
1.8k
views
Answer:
Answer: help in my miRNA analysis
2.1 years ago by
Carlo Yague
8.6k
3
votes
1
reply
1.7k
views
Answer:
Answer: What do we call a transcript?
2.1 years ago by
Carlo Yague
8.6k
1
vote
1
reply
2.4k
views
Answer:
Answer: identify and remove adapter sequence
2.2 years ago by
Carlo Yague
8.6k
1
vote
1
reply
1.3k
views
Answer:
Answer: bamCoverage not generating BigWig output file when using for loop
2.2 years ago by
Carlo Yague
8.6k
2
votes
1
reply
3.3k
views
Answer:
Answer: How to perform normalization when converting ATAC bam file to bigwig file using
2.2 years ago by
Carlo Yague
8.6k
3
votes
0
replies
752
views
Answer:
Answer: Deseq2
2.2 years ago by
Carlo Yague
8.6k
3
votes
2
replies
1.8k
views
Answer:
Answer: delete a file
2.2 years ago by
Carlo Yague
8.6k
1
vote
1
reply
590
views
Answer:
Answer: different DEGs with different number of sample input.
2.2 years ago by
Carlo Yague
8.6k
2
votes
1
reply
711
views
Answer:
Answer: Why is it hard to align longer DNA sequences?
2.3 years ago by
Carlo Yague
8.6k
2
votes
1
reply
903
views
Answer:
Answer: P-value cut-off to identify SNPs at ChIP-seq peaks? [BedTools]
2.3 years ago by
Carlo Yague
8.6k
0
votes
0
replies
1.2k
views
Answer:
Answer: DESeq2 comparisons using contrast
2.3 years ago by
Carlo Yague
8.6k
3
votes
2
replies
2.0k
views
Answer:
Answer: Why all those reads in bam files were unmapped?
2.3 years ago by
Carlo Yague
8.6k
0
votes
0
replies
631
views
Answer:
Answer: RiboZero RNA Seq vs Poly A RNA seq
2.3 years ago by
Carlo Yague
8.6k
0
votes
1
reply
1.1k
views
Answer:
Answer: Duplication in DNA-seq vs RNA-seq
2.3 years ago by
Carlo Yague
8.6k
1
vote
1
reply
2.0k
views
Answer:
Answer: bubble plot of GO terms
2.3 years ago by
Carlo Yague
8.6k
1
vote
1
reply
874
views
Answer:
Answer: alignment using bowtie2
2.4 years ago by
Carlo Yague
8.6k
3
votes
1
reply
1.7k
views
Answer:
Answer: How does the DNA-seq machine know which strand that is forward/reverse?
2.4 years ago by
Carlo Yague
8.6k
2
votes
0
replies
592
views
Answer:
Answer: In the NGS pipeline, why read are sorted before marking duplicates?
2.4 years ago by
Carlo Yague
8.6k
0
votes
1
reply
1.6k
views
Answer:
Answer: Getting p-values for a proteomics dataset with repeated experiment results
2.4 years ago by
Carlo Yague
8.6k
0
votes
0
replies
696
views
Answer:
Answer: Official/centralized/designated genetic/biological knowledge graph?
2.4 years ago by
Carlo Yague
8.6k
1
vote
1
reply
1.0k
views
Answer:
Answer: Gene list for GO enrichment after DESeq2. Should I use a gene list of differenti
2.4 years ago by
Carlo Yague
8.6k
2
votes
1
reply
1.6k
views
Answer:
Answer: collapseReplicates in DESeq2 when the number of technical replicates per biosamp
2.4 years ago by
Carlo Yague
8.6k
321 results • Page
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