User: regrant

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regrant20
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New User
Location:
United States
Last seen:
3 years, 4 months ago
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4 years, 1 month ago
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Posts by regrant

<prev • 3 results • page 1 of 1 • next >
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VEP vs webserver Polyphen scores
... Hello, I have recently noted a discrepancy the scores given by running PolyPhen at its [website][1] vs getting the PolyPhen score from ensembl's variant effect predictor ([VEP][2], hg19). Here is one example, with the polyphen scores bolded: **POLYPHEN** - Protein Identifier: AKT2 - Position: ...
polyphen annotation vep missense written 3.4 years ago by regrant20 • updated 3.4 years ago by Emily_Ensembl19k
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Comment: C: Input size for RNAfold and RNAalifold
... It appears that I finally hit the right search term. RNAplfold might be the better package for this kind of question. ...
written 3.7 years ago by regrant20
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Input size for RNAfold and RNAalifold
... One task I routinely have to do is evaluate the effect of variants found in the UTRs of human mRNAs. One site I use for this is [RegRNA 2.0][1] in the hopes of finding transcription factors or new miRNA sites (in the case of 3'-UTRs). Something I have recently been tasked with is evaluating if a c ...
rna rnaalifold snp rnafold written 3.7 years ago by regrant20

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