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3.0k
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Comment:
C: Comparing the WG sequenced isolate against the other same genus isolates on the
5.2 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
3.0k
views
Comment:
C: Comparing the WG sequenced isolate against the other same genus isolates on the
5.2 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
14k
views
Comment:
C: Heatmap with custom gene labels annotated on the rows
5.2 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
14k
views
Comment:
C: Heatmap with custom gene labels annotated on the rows
5.2 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
3.0k
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Comment:
C: Comparing the WG sequenced isolate against the other same genus isolates on the
5.2 years ago by
bioinforesearchquestions
▴ 370
4
votes
4
replies
14k
views
Heatmap with custom gene labels annotated on the rows
differential-gene-expression
RNAseq
heatmap
updated 7 months ago by
Ram
44k • written 5.2 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
3.0k
views
Comment:
C: Comparing the WG sequenced isolate against the other same genus isolates on the
5.2 years ago by
bioinforesearchquestions
▴ 370
4
votes
18
replies
3.0k
views
Comparing the WG sequenced isolate against the other same genus isolates on the public database
alignment
WGS
SNPs
BLAST
bacteria
updated 5.2 years ago by
bioguy
▴ 50 • written 5.3 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
1.1k
views
Comment:
C: What will be the impact of strandedness on differentially expressed genes?
5.3 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
6.1k
views
Comment:
C: How to customize the MA Plot (DESeq2) with some gene to be labelled
5.3 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
6.1k
views
Comment:
C: How to customize the MA Plot (DESeq2) with some gene to be labelled
5.3 years ago by
bioinforesearchquestions
▴ 370
3
votes
5
replies
6.1k
views
How to customize the MA Plot (DESeq2) with some gene to be labelled
RNAseq
MA plot
RNA-Seq
updated 5.3 years ago by
Ram
44k • written 5.3 years ago by
bioinforesearchquestions
▴ 370
1
vote
2
replies
1.1k
views
What will be the impact of strandedness on differentially expressed genes?
RNAseq
stranded
expression
DE
updated 5.3 years ago by
h.mon
35k • written 5.3 years ago by
bioinforesearchquestions
▴ 370
10
votes
7
replies
5.8k
views
Could not find rRNA genes (28S, 18S, 5.8S and 5S) in human_genes.gtf file?
gene
GTF
rRNA
RNA-seq
updated 2.2 years ago by
Ram
44k • written 9.1 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
2.7k
views
Comment:
C: Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
5.4 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
8.0k
views
Comment:
C: Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream a
5.4 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
8.0k
views
Comment:
C: Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream a
5.4 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
8.0k
views
Comment:
C: Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream a
5.4 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
8.0k
views
Comment:
C: Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream a
5.4 years ago by
bioinforesearchquestions
▴ 370
0
votes
5
replies
1.7k
views
Error in cummeRbund R library package (Error: Columns index not found)
RNAseq
cummeRbund
cuffdiff
updated 5.4 years ago by
Abdul Rawoof
▴ 60 • written 6.1 years ago by
bioinforesearchquestions
▴ 370
3
votes
9
replies
8.0k
views
Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream analyses?
Assembly
SPAdes
contigs
QUAST
updated 5.4 years ago by
h.mon
35k • written 5.4 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
2.7k
views
Comment:
C: Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
5.4 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
2.7k
views
Comment:
C: Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
5.4 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
2.7k
views
Comment:
C: Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
5.4 years ago by
bioinforesearchquestions
▴ 370
5
votes
7
replies
2.7k
views
Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
Assembly
SPAdes
Soap-denovo
WGS
bacterial
updated 5.4 years ago by
h.mon
35k • written 5.5 years ago by
bioinforesearchquestions
▴ 370
2
votes
1
reply
1.2k
views
Identify AMR genes from WGS bacterial sequence
WGS
bacteria
AMR
genome assembly
updated 5.5 years ago by
ctseto
▴ 310 • written 5.5 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
2.1k
views
Comment:
C: How to find pathogenicity of a single missense variant ?
5.6 years ago by
bioinforesearchquestions
▴ 370
1
vote
0
replies
2.1k
views
Comment:
C: How to find pathogenicity of a single missense variant ?
5.6 years ago by
bioinforesearchquestions
▴ 370
8
votes
8
replies
2.1k
views
How to find pathogenicity of a single missense variant ?
SNP
sift
polyphen2
updated 5.6 years ago by
Kevin Blighe
88k • written 5.6 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
2.1k
views
Comment:
C: How to find pathogenicity of a single missense variant ?
updated 5.6 years ago by
GenoMax
147k • written 5.6 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
980
views
Is there any other options to fetch the rs-ids for the markers for the Illumina custom array?
SNP
illumina
iScan
rsids
dbsnp
5.6 years ago by
bioinforesearchquestions
▴ 370
1
vote
2
replies
4.1k
views
What does yield refer to in demultiplexing statistics
NGS
fastq
RNA-seq
updated 2.2 years ago by
Ram
44k • written 9.1 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
1.5k
views
Comment:
C: Selecting methods for performing pairwise RNAseq analysis without replicates
5.7 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
1.5k
views
Comment:
C: Selecting methods for performing pairwise RNAseq analysis without replicates
5.8 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
1.5k
views
Comment:
C: Selecting methods for performing pairwise RNAseq analysis without replicates
5.8 years ago by
bioinforesearchquestions
▴ 370
3
votes
8
replies
1.5k
views
Selecting methods for performing pairwise RNAseq analysis without replicates
rna-seq
DESeq2
DESeq
Hisat2
tissues
updated 5.8 years ago by
i.sudbery
20k • written 5.8 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
1.2k
views
Comment:
C: Identifying consensus sequence between multiple Arabidopsis genome sequences
5.9 years ago by
bioinforesearchquestions
▴ 370
0
votes
2
replies
1.2k
views
Identifying consensus sequence between multiple Arabidopsis genome sequences
Alignment
Consensus
SNPs
Variations
Plant
5.9 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
3.0k
views
Comment:
C: Pathway analysis and Gene enrichment Analysis Queries
5.9 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
3.0k
views
Comment:
C: Pathway analysis and Gene enrichment Analysis Queries
5.9 years ago by
bioinforesearchquestions
▴ 370
10
votes
8
replies
3.0k
views
Pathway analysis and Gene enrichment Analysis Queries
RNAseq
Pathway analysis
Enrichment score
GSEA
updated 5.9 years ago by
dz2353
▴ 120 • written 5.9 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
1.6k
views
Comment:
C: mirdeep2 v 10
updated 6.0 years ago by
Ram
44k • written 6.0 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
2.2k
views
Comment:
C: cummeRbund create database ERROR
6.0 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
1.7k
views
Comment:
C: Error in cummeRbund R library package (Error: Columns index not found)
6.0 years ago by
bioinforesearchquestions
▴ 370
4
votes
4
replies
12k
views
How to download VCF of 1000 genome project with population frequencies?
SNPs
1000Genome
VCF
rsids
updated 6.1 years ago by
finswimmer
16k • written 6.1 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
1.7k
views
Comment:
C: Error in cummeRbund R library package (Error: Columns index not found)
6.1 years ago by
bioinforesearchquestions
▴ 370
2
votes
2
replies
2.3k
views
I have some queries on coverage
coverage
RNASeq
DNAseq
SNP
updated 6.2 years ago by
Ram
44k • written 8.7 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
2.3k
views
Comment:
C: I have some queries on coverage
updated 6.2 years ago by
Ram
44k • written 8.7 years ago by
bioinforesearchquestions
▴ 370
5
votes
1
reply
2.8k
views
Which one do I need to consider single-read or multi-read mappability bigwig file for creating mouse mappability file?
Mappability
mouse mm10
mm9
HMMcopy
updated 6.2 years ago by
mehran.karimzade
▴ 220 • written 6.7 years ago by
bioinforesearchquestions
▴ 370
1
vote
1
reply
1.2k
views
how to evaluate coverage at a regions of interest and generate specificity, sensitivity and PPV for that region?
SNP
DNAseq
specificity
sensitivity
PPV
updated 6.3 years ago by
Biostar
20 • written 6.3 years ago by
bioinforesearchquestions
▴ 370
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