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Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
3.8 years ago by bioinforesearchquestions ▴ 370
0
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1
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2.0k
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Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
3.8 years ago by bioinforesearchquestions ▴ 370
0
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0
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13k
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Comment: C: Heatmap with custom gene labels annotated on the rows
3.8 years ago by bioinforesearchquestions ▴ 370
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0
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13k
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Comment: C: Heatmap with custom gene labels annotated on the rows
3.8 years ago by bioinforesearchquestions ▴ 370
0
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0
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2.0k
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Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
3.8 years ago by bioinforesearchquestions ▴ 370
4
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4
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13k
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Heatmap with custom gene labels annotated on the rows
RNAseq heatmap differential gene expression Bulk
3.8 years ago by bioinforesearchquestions ▴ 370
0
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1
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2.0k
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Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
3.8 years ago by bioinforesearchquestions ▴ 370
4
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18
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2.0k
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Comparing the WG sequenced isolate against the other same genus isolates on the public database
alignment WGS SNPs BLAST bacteria
updated 3.8 years ago by ▴ 50 • written 3.8 years ago by ▴ 370
0
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0
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799
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Comment: C: What will be the impact of strandedness on differentially expressed genes?
3.8 years ago by bioinforesearchquestions ▴ 370
0
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0
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4.7k
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Comment: C: How to customize the MA Plot (DESeq2) with some gene to be labelled
3.8 years ago by bioinforesearchquestions ▴ 370
0
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1
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4.7k
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Comment: C: How to customize the MA Plot (DESeq2) with some gene to be labelled
3.8 years ago by bioinforesearchquestions ▴ 370
3
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5
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4.7k
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How to customize the MA Plot (DESeq2) with some gene to be labelled
RNAseq MA plot RNA-Seq
updated 3.8 years ago by 39k • written 3.8 years ago by ▴ 370
1
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2
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799
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What will be the impact of strandedness on differentially expressed genes?
RNAseq stranded expression DE
updated 3.8 years ago by 34k • written 3.8 years ago by ▴ 370
10
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7
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4.9k
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Could not find rRNA genes (28S, 18S, 5.8S and 5S) in human_genes.gtf file?
gene GTF rRNA RNA-seq
updated 9 months ago by 39k • written 7.6 years ago by ▴ 370
0
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1
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1.9k
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Comment: C: Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
3.9 years ago by bioinforesearchquestions ▴ 370
0
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1
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5.6k
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Comment: C: Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream a
3.9 years ago by bioinforesearchquestions ▴ 370
0
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1
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5.6k
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Comment: C: Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream a
3.9 years ago by bioinforesearchquestions ▴ 370
0
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1
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5.6k
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Comment: C: Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream a
3.9 years ago by bioinforesearchquestions ▴ 370
0
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1
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5.6k
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Comment: C: Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream a
3.9 years ago by bioinforesearchquestions ▴ 370
0
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5
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1.4k
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Error in cummeRbund R library package (Error: Columns index not found)
RNAseq cummeRbund cuffdiff
updated 3.9 years ago by ▴ 60 • written 4.7 years ago by ▴ 370
3
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9
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5.6k
views
Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream analyses?
Assembly SPAdes contigs QUAST
updated 3.9 years ago by 34k • written 4.0 years ago by ▴ 370
0
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0
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1.9k
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Comment: C: Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
4.0 years ago by bioinforesearchquestions ▴ 370
0
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1
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1.9k
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Comment: C: Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
4.0 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
1.9k
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Comment: C: Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
4.0 years ago by bioinforesearchquestions ▴ 370
5
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7
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1.9k
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Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
Assembly SPAdes Soap-denovo WGS bacterial
updated 4.0 years ago by 34k • written 4.0 years ago by ▴ 370
2
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1
reply
961
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Identify AMR genes from WGS bacterial sequence
WGS bacteria AMR genome assembly
updated 4.0 years ago by ▴ 310 • written 4.0 years ago by ▴ 370
0
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1
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1.4k
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Comment: C: How to find pathogenicity of a single missense variant ?
4.1 years ago by bioinforesearchquestions ▴ 370
1
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0
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1.4k
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Comment: C: How to find pathogenicity of a single missense variant ?
4.1 years ago by bioinforesearchquestions ▴ 370
8
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8
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1.4k
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How to find pathogenicity of a single missense variant ?
SNP sift polyphen2
updated 4.1 years ago by 85k • written 4.1 years ago by ▴ 370
0
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1
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1.4k
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Comment: C: How to find pathogenicity of a single missense variant ?
updated 4.1 years ago by 129k • written 4.1 years ago by ▴ 370
0
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0
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804
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Is there any other options to fetch the rs-ids for the markers for the Illumina custom array?
SNP illumina iScan rsids dbsnp
4.1 years ago by bioinforesearchquestions ▴ 370
1
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2
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3.6k
views
What does yield refer to in demultiplexing statistics
NGS fastq RNA-seq
updated 9 months ago by 39k • written 7.6 years ago by ▴ 370
0
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1
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961
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Comment: C: Selecting methods for performing pairwise RNAseq analysis without replicates
4.3 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
961
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Comment: C: Selecting methods for performing pairwise RNAseq analysis without replicates
4.3 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
961
views
Comment: C: Selecting methods for performing pairwise RNAseq analysis without replicates
4.3 years ago by bioinforesearchquestions ▴ 370
3
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8
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961
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Selecting methods for performing pairwise RNAseq analysis without replicates
rna-seq DESeq2 DESeq Hisat2 tissues
updated 4.3 years ago by 17k • written 4.3 years ago by ▴ 370
0
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0
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904
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Comment: C: Identifying consensus sequence between multiple Arabidopsis genome sequences
4.4 years ago by bioinforesearchquestions ▴ 370
0
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2
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904
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Identifying consensus sequence between multiple Arabidopsis genome sequences
Alignment Consensus SNPs Variations Plant
4.4 years ago by bioinforesearchquestions ▴ 370
0
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0
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2.2k
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Comment: C: Pathway analysis and Gene enrichment Analysis Queries
4.5 years ago by bioinforesearchquestions ▴ 370
0
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1
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2.2k
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Comment: C: Pathway analysis and Gene enrichment Analysis Queries
4.5 years ago by bioinforesearchquestions ▴ 370
10
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8
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2.2k
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Pathway analysis and Gene enrichment Analysis Queries
RNAseq Pathway analysis Enrichment score GSEA
updated 4.5 years ago by ▴ 120 • written 4.5 years ago by ▴ 370
0
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0
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1.1k
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Comment: C: mirdeep2 v 10
updated 4.5 years ago by 39k • written 4.5 years ago by ▴ 370
0
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0
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2.0k
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Comment: C: cummeRbund create database ERROR
4.5 years ago by bioinforesearchquestions ▴ 370
0
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0
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1.4k
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Comment: C: Error in cummeRbund R library package (Error: Columns index not found)
4.5 years ago by bioinforesearchquestions ▴ 370
3
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4
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8.0k
views
How to download VCF of 1000 genome project with population frequencies?
SNPs 1000Genome VCF rsids
updated 4.6 years ago by 16k • written 4.6 years ago by ▴ 370
0
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1
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1.4k
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Comment: C: Error in cummeRbund R library package (Error: Columns index not found)
4.7 years ago by bioinforesearchquestions ▴ 370
2
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2
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2.0k
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I have some queries on coverage
coverage RNASeq DNAseq SNP
updated 4.7 years ago by 39k • written 7.3 years ago by ▴ 370
0
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0
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2.0k
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Comment: C: I have some queries on coverage
updated 4.7 years ago by 39k • written 7.3 years ago by ▴ 370
5
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1
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2.3k
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Which one do I need to consider single-read or multi-read mappability bigwig file for creating mouse mappability file?
Mappability mouse mm10 mm9 HMMcopy
updated 4.8 years ago by ▴ 220 • written 5.3 years ago by ▴ 370
1
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1
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930
views
how to evaluate coverage at a regions of interest and generate specificity, sensitivity and PPV for that region?
SNP DNAseq specificity sensitivity PPV
updated 4.8 years ago by 20 • written 4.9 years ago by ▴ 370
285 results • Page 2 of 6
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