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questions
1
vote
6
replies
2.1k
views
Randomly select a number of variants and samples from a multi-sample VCF file (pVCF)
vcf
pvcf
updated 9 weeks ago by
LauferVA
4.1k • written 14 months ago by
'
▴ 300
0
votes
4
replies
900
views
RSeQC - does it make sense to run it on the genome BAM when alignment was to transcriptome with STAR?
star
transcriptome
genome
rseqc
qc
updated 24 months ago by
Istvan Albert
100k • written 24 months ago by
'
▴ 300
2
votes
1
reply
409
views
Are Read Groups (@RG tags) important when using tools like STAR, Kallisto, and Salmon for alignment?
alignment
rna-seq
rg
group
read
updated 24 months ago by
ATpoint
81k • written 24 months ago by
'
▴ 300
1
vote
3
replies
990
views
Common practice for aligning hundreds of FASTQ files? Would the resulting BAM files need to be merged into one? Is there any benefit to align 1000 sa…
fastq
alignment
bam
rna-seq
STAR
24 months ago by
'
▴ 300
4
votes
6
replies
1.4k
views
Does the absence of BAI file just cause an algorithm to run slower or would it also generate incorrect results? For example, why doesn't RSEM require…
bai
alignment
bam
rsem
gene-expression
updated 2.1 years ago by
Istvan Albert
100k • written 2.1 years ago by
'
▴ 300
3
votes
6
replies
3.0k
views
Velvet Assembly Parameters
velvet
Assembly
updated 3.4 years ago by
Biostar
20 • written 8.2 years ago by
'
▴ 300
10
votes
7
replies
2.7k
views
Understanding Kernel Ridge Regression for Drug-Target Interaction
kernel
regression
r
ridge
kernel trick
updated 3.5 years ago by
casey
▴ 20 • written 7.9 years ago by
'
▴ 300
5
votes
1
reply
2.4k
views
How to model transcriptional networks from gene expression time-course data
R
updated 5.2 years ago by
Biostar
20 • written 8.1 years ago by
'
▴ 300
0
votes
3
replies
1.5k
views
Gene (mRNA) - Protein Interaction databases and prediction
ppi
protein
gene
mrna
databases
updated 5.7 years ago by
c.chakraborty
▴ 170 • written 5.7 years ago by
'
▴ 300
1
vote
5
replies
4.2k
views
Normalized Smith-Waterman similarity score based on pairwise amino acids sequence alignments
alignment
5.7 years ago by
'
▴ 300
2
votes
8
replies
1.3k
views
Classify, organize, and cluster a list of proteins / discovering relations between a set of proteins and linking them to disease
protein
cluster
5.7 years ago by
'
▴ 300
3
votes
13
replies
2.3k
views
Is PatScan RNA pattern searcher no longer available as an online webtool?
RNA
PatScan
RNA pattern
6.5 years ago by
'
▴ 300
6
votes
7
replies
3.9k
views
Comparing contigs results from two different assembler
Assembly
updated 20 months ago by
Ram
43k • written 8.2 years ago by
'
▴ 300
6
votes
6
replies
1.9k
views
7 follow
How relevant, valuable, and important is Information Visualization nowadays in Bioinformatics?
information-visualization
infovis
updated 11 months ago by
Ram
43k • written 7.4 years ago by
'
▴ 300
5
votes
6
replies
3.0k
views
Non-Bioinformatics Jobs with a Bioinformatics Degree
career
updated 11 months ago by
Ram
43k • written 7.4 years ago by
'
▴ 300
6
votes
1
reply
2.2k
views
Normalized Smith-Waterman Formula
smith-waterman
updated 7.7 years ago by
Biostar
20 • written 7.9 years ago by
'
▴ 300
3
votes
2
replies
2.9k
views
Perturbed vs. Unperturbed Models
model
7.8 years ago by
'
▴ 300
3
votes
2
replies
3.8k
views
Training and/or Master's Thesis at EMBL Heidelberg
embl
updated 7.8 years ago by
Jean-Karim Heriche
27k • written 7.8 years ago by
'
▴ 300
3
votes
1
reply
1.8k
views
How to tell if two different network models are statistically significantly different from one another?
graph
updated 7.8 years ago by
Jean-Karim Heriche
27k • written 7.8 years ago by
'
▴ 300
5
votes
7
replies
3.3k
views
Kernel Ridge Regression in R for Drug-Target Interaction based on Kronecker Products computed from Tanimoto Kernels and Smith-Waterman Scores
R
machine learning
kernel
regression
updated 7.9 years ago by
Jean-Karim Heriche
27k • written 7.9 years ago by
'
▴ 300
3
votes
2
replies
2.3k
views
R - GOSemSim - mgeneSim / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
R
GOSemSim
mgeneSim
updated 7.9 years ago by
Jean-Karim Heriche
27k • written 7.9 years ago by
'
▴ 300
2
votes
3
replies
1.7k
views
Where to find Bioinformatics datasets for the purpose of visualization
R
updated 8.0 years ago by
michael.ante
★ 3.8k • written 8.0 years ago by
'
▴ 300
0
votes
0
replies
1.5k
views
Finding number of pseudogenes in girinst's CENSOR
gene
updated 8.1 years ago by
Biostar
20 • written 8.1 years ago by
'
▴ 300
1
vote
2
replies
1.6k
views
Assembling Another Genome based on a Reference
Assembly
8.1 years ago by
'
▴ 300
0
votes
1
reply
2.8k
views
Velvet Assembly Online
velvet
assembly
8.1 years ago by
'
▴ 300
0
votes
0
replies
2.6k
views
How to interpret MUMmer plots? When do you know that your alignment was a good one?
MUMmer
8.1 years ago by
'
▴ 300
2
votes
5
replies
2.9k
views
Percentage of similarity between two contigs files
Assembly
contigs
updated 20 months ago by
Ram
43k • written 8.1 years ago by
'
▴ 300
0
votes
4
replies
3.7k
views
What is "Total Length" in QUAST?
quast
updated 20 months ago by
Ram
43k • written 8.1 years ago by
'
▴ 300
0
votes
2
replies
2.0k
views
Useful Resources for Computational Genomics/Bioinformatics-related concepts/topics
genomics
resources
books
updated 18 months ago by
Ram
43k • written 8.5 years ago by
'
▴ 300
4
votes
3
replies
2.1k
views
Genome Assembly for a Beginner
Genome
Assembly
updated 20 months ago by
Ram
43k • written 8.2 years ago by
'
▴ 300
0
votes
1
reply
2.3k
views
Jukes-Cantor for Proteins
Jukes-Cantor
updated 8.5 years ago by
Brice Sarver
★ 3.8k • written 8.5 years ago by
'
▴ 300
31 results • Page
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