User: bshifaw

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bshifaw50
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50
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New User
Location:
United States
Last seen:
2 years, 11 months ago
Joined:
3 years, 6 months ago
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Posts by bshifaw

<prev • 5 results • page 1 of 1 • next >
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Answer: A: Read Group In Sam/Bam Files: What Do They Exactly Describe?
... The GATK website has a detailed explanation for read groups found in their [dictionary][1]. Here is an excerpt: "Read groups are identified in the SAM/BAM /CRAM file by a number of tags that are defined in the official SAM specification. These tags, when assigned appropriately, allow us to differen ...
written 3.0 years ago by bshifaw50
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Answer: A: Converting Bam To Fastq
... You can use Picard java -jar picard.jar SamToFASTQ \ I=input.bam \ FASTQ=output.fastq http://broadinstitute.github.io/picard/command-line-overview.html#SamToFastq ...
written 3.0 years ago by bshifaw50 • updated 7 months ago by RamRS21k
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Shortening Whole genome for Benchmarking
... I wanted to test new pre processing bioinformatics workflows. I have a pair of whole genome sequences, FASTQ files ~100gb each. Running this data set takes a mighty long time to complete, and running them on a new workflow they take a mighty long time to fail. I want to know if it would be fine if i ...
sequence benchmarking written 3.1 years ago by bshifaw50 • updated 3.1 years ago by Carlo Yague4.4k
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What does S1 , L004 , R2 , 001 stand for in HCC###BL_S1_L004_R2_001.fastq?
... What does S1 , L004 , R2 , 001 stand for? for example HCC###BL_S1_L004_R2_001.fastq ...
genome name format sequencing written 3.1 years ago by bshifaw50 • updated 3.1 years ago by RamRS21k
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Answer: A: alignments of DNA sequences
... You can try blast 2 to perform the alignment (click here). You'll be able to align sequences from one file with sequences of another.  ...
written 3.5 years ago by bshifaw50

Latest awards to bshifaw

Teacher 2.9 years ago, created an answer with at least 3 up-votes. For A: Read Group In Sam/Bam Files: What Do They Exactly Describe?

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