User: bshifaw

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bshifaw50
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50
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New User
Location:
United States
Last seen:
3 years, 8 months ago
Joined:
4 years, 3 months ago
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Posts by bshifaw

<prev • 5 results • page 1 of 1 • next >
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Answer: A: Read Group In Sam/Bam Files: What Do They Exactly Describe?
... The GATK website has a detailed explanation for read groups found in their [dictionary][1]. Here is an excerpt: "Read groups are identified in the SAM/BAM /CRAM file by a number of tags that are defined in the official SAM specification. These tags, when assigned appropriately, allow us to differen ...
written 3.7 years ago by bshifaw50
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Answer: A: Converting Bam To Fastq
... You can use Picard java -jar picard.jar SamToFASTQ \ I=input.bam \ FASTQ=output.fastq http://broadinstitute.github.io/picard/command-line-overview.html#SamToFastq ...
written 3.8 years ago by bshifaw50 • updated 16 months ago by RamRS25k
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Shortening Whole genome for Benchmarking
... I wanted to test new pre processing bioinformatics workflows. I have a pair of whole genome sequences, FASTQ files ~100gb each. Running this data set takes a mighty long time to complete, and running them on a new workflow they take a mighty long time to fail. I want to know if it would be fine if i ...
sequence benchmarking written 3.8 years ago by bshifaw50 • updated 3.8 years ago by Carlo Yague4.8k
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What does S1 , L004 , R2 , 001 stand for in HCC###BL_S1_L004_R2_001.fastq?
... What does S1 , L004 , R2 , 001 stand for? for example HCC###BL_S1_L004_R2_001.fastq ...
genome name format sequencing written 3.9 years ago by bshifaw50 • updated 3.9 years ago by RamRS25k
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Answer: A: alignments of DNA sequences
... You can try blast 2 to perform the alignment (click here). You'll be able to align sequences from one file with sequences of another. ...
written 4.3 years ago by bshifaw50 • updated 10 weeks ago by RamRS25k

Latest awards to bshifaw

Teacher 3.7 years ago, created an answer with at least 3 up-votes. For A: Read Group In Sam/Bam Files: What Do They Exactly Describe?

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