User: haoye.ecust

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Posts by haoye.ecust

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Answer: A: pyGeno 1.2: Python package for Personalized Genomics and Proteomics
... Thank you very much, Tariq. The bug was properly fixed, since I redirect the temporary file folder. Hao ...
written 7 days ago by haoye.ecust0
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Answer: A: pyGeno 1.2: Python package for Personalized Genomics and Proteomics
... When I use the following command, it error was listed as following. "**sqlite3.OperationalError: database or disk is full**" >>> from pyGeno.importation.Genomes import * >>> importGenome('/home/yeh/program/Python-2.7.13/lib/python2.7/site-packages/pyGeno/bootstrap_data/genomes/H ...
written 8 days ago by haoye.ecust0
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Answer: A: pyGeno 1.2: Python package for Personalized Genomics and Proteomics
... Hi Tariq, I have an quession on importing genome data in PyGeno. Since, The human reference sequence data was downloaded locally in HPC. The manifest.ini file was modified as following. It report a dug saying "sqlite3.OperationalError: disk I/O error",when I import the genome. However, the free d ...
written 8 days ago by haoye.ecust0
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Difference of GT '1','1/1' in VCF file generated from isaac SNV calling
... Hi guys, I come across a issue in the VCF file generated from isaac SNV calling in illumina. The GT contains "1" and "1/1". Do any one knows what's difference between them. Does "1" also means "homozygous"? The GT = "1" are found in the chr 1, 2, besides chr x, y.  (see the example below)     ...
next-gen snp written 22 months ago by haoye.ecust0

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