User: plink_9857

gravatar for plink_9857
plink_985750
Reputation:
50
Status:
New User
Location:
United States
Last seen:
1 year, 2 months ago
Joined:
4 years, 1 month ago
Email:
m*****@asu.edu

Posts by plink_9857

<prev • 15 results • page 1 of 2 • next >
1
vote
0
answers
364
views
0
answers
Subnetworks for Genomic Data
... What algorithms are you all using these days to build subnetworks from genomic data? ...
omics networks written 15 months ago by plink_985750
0
votes
0
answers
602
views
0
answers
igraph PoTRA error
... I need help troubleshooting the PoTRA program (which depends on igraph). The PoTRA's program functions, workspace file, etc can be found here: See the error message below. https://github.com/GenomicsPrograms/PoTRA/tree/master/PoTRA%20Code After running the following code: First paste the function ...
igraph potra written 20 months ago by plink_985750 • updated 20 months ago by genomax74k
0
votes
0
answers
458
views
0
answers
miR2Pathway and finite observations
... **I am using the miR2Pathway package and have encountered an error message and warning messages that I need help troubleshooting**. The finite observations warning is interesting to me, since it alludes to there being too few mirna listed. The input file contains 1,046 miRNAs that are being analyze ...
pathway R mirna written 20 months ago by plink_985750 • updated 20 months ago by genomax74k
0
votes
0
answers
552
views
0
answers
scRNA gene scores/ranking computational tool
... I'm trying to find a good tool to perform gene scoring or gene ranking with scRNA data. Any recommendations? ...
scrna gene scores gene ranks written 2.2 years ago by plink_985750
4
votes
1
answer
1.1k
views
5 follow
1
answer
CNVkit GRCh38 tumor-normal pair
... I recently tried to use CNVKit in DNAnexus. CNVKit requires a tumor and normal bam, reference fasta (I used GRCh38 from Gencode) and a target or bait file. I tried to use the hg38 bed file from ucsc (hg38_GENCODE_v23_basic.bed), but the CNVKit program did not find common chromosome names between th ...
wes tcga grch38 cnv bed written 2.4 years ago by plink_985750 • updated 2.4 years ago by Eric T.2.5k
1
vote
0
answers
784
views
0
answers
Job: Bioinformatics Analyst I at Systems Imagination, Scottsdale, AZ, USA
... **Responsibilities** The successful candidate for the position of Bioinformatics Analyst will join an interdisciplinary team of computational biologists, bioinformatics scientists, laboratory scientists and management executives who are working together to develop new methodologies to rapidly and a ...
bioinformatics job written 2.6 years ago by plink_985750 • updated 2.6 years ago by genomax74k
0
votes
0
answers
818
views
0
answers
Job: Bioinformatics Scientist at Systems Imagination, Scottsdale, AZ, USA
... **Responsibilities** The successful candidate for the position of Bioinformatics Scientist will join an interdisciplinary team of computational biologists, bioinformatics analysts, laboratory scientists and management executives who are working together to develop new methodologies to rapidly and a ...
bioinformatics ngs statistics machine learning job written 2.6 years ago by plink_985750 • updated 2.6 years ago by genomax74k
1
vote
1
answer
1.1k
views
1
answer
BWAKIT HLA Analysis
... Hi- I recently used BWAKIT for HLA typing. But am having difficulty finding information that can help me interpret the output. Here are my questions and links to somewhat helpful sites. 1) What are the headers for the output file: out.hla.top? (Snippet from my out.hla.top file): HLA-A*29:02: ...
analysis hla bwakit written 3.0 years ago by plink_985750 • updated 3.0 years ago by drmaly220
0
votes
0
answers
2.7k
views
0
answers
Comment: A: GATK Haplotype Caller
... Thanks for the suggestion, but I tried that, its just hard to see in the command I used above. ...
written 3.0 years ago by plink_985750
0
votes
0
answers
2.7k
views
0
answers
Comment: C: GATK Haplotype Caller
... I took several steps to get the contigs in the same format chr...(i.e. changing the contig header in the post-bcftools VCF file, aligning my samples to HG38, even changing the VCF file's chrom entries to chr# ) so that this error would not continue to show up. Unfortunately, I kept getting the same ...
written 3.0 years ago by plink_985750

Latest awards to plink_9857

Popular Question 20 months ago, created a question with more than 1,000 views. For Perl script for reformatting a plink/seq output file
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Perl script for reformatting a plink/seq output file
Popular Question 2.2 years ago, created a question with more than 1,000 views. For GATK Haplotype Caller
Student 3.0 years ago, asked a question with at least 3 up-votes. For Perl script for reformatting a plink/seq output file

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1987 users visited in the last hour