Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
899
views
Comment: C: Why can we still be able to continously discover new cancer driver bioinformatic
3.3 years ago by CY ▴ 710
0
votes
1
reply
2.5k
views
Answer: A: Whole Blood Samples of Cancer Patients from TCGA?
updated 3.3 years ago by 38k • written 7.4 years ago by ▴ 710
0
votes
0
replies
9.3k
views
Comment: C: how to use ESTIMATE to infer tumor purity and stromal score from RNA-seq data?
3.4 years ago by CY ▴ 710
1
vote
0
replies
412
views
Method to detect genome doubling
CNV genome doubling
3.4 years ago by CY ▴ 710
1
vote
5
replies
768
views
Composition of low mappable region in human genome
mappability repetitive region homologous region
updated 3.4 years ago by 20 • written 3.4 years ago by ▴ 710
0
votes
0
replies
475
views
Any absolute quantification method for detection of polyploidy tumor sample
PCR RNA-Seq
3.4 years ago by CY ▴ 710
0
votes
0
replies
6.6k
views
Comment: C: What is the best way to combine machine learning algorithms for feature selectio
3.4 years ago by CY ▴ 710
0
votes
1
reply
768
views
Comment: C: Composition of low mappable region in human genome
3.4 years ago by CY ▴ 710
0
votes
1
reply
768
views
Comment: C: Composition of low mappable region in human genome
3.4 years ago by CY ▴ 710
0
votes
0
replies
2.2k
views
Comment: C: Regions to exclude in CNV analysis
3.4 years ago by CY ▴ 710
1
vote
2
replies
960
views
How splice-aware aligner (RNA-Seq) deal with long gap (intron) penalty
RNA-Seq STAR alignment hisat tophat
updated 3.4 years ago by 20 • written 3.5 years ago by ▴ 710
0
votes
0
replies
663
views
Comment: C: How does base quality / mapping quality affect germline calling
3.4 years ago by CY ▴ 710
1
vote
3
replies
663
views
How does base quality / mapping quality affect germline calling
haplotypecaller germline calling MAPQ
3.4 years ago by CY ▴ 710
0
votes
1
reply
2.5k
views
Comment: C: Infer somatic mutations without normal control
3.4 years ago by CY ▴ 710
0
votes
0
replies
955
views
Comment: C: non-reference allele didn't be called into vcf by HC
3.4 years ago by CY ▴ 710
0
votes
0
replies
4.8k
views
Comment: C: "Protein search using Blastp" vs "protein search using hmm profile"
3.4 years ago by CY ▴ 710
0
votes
1
reply
955
views
Comment: C: non-reference allele didn't be called into vcf by HC
3.4 years ago by CY ▴ 710
0
votes
4
replies
955
views
non-reference allele didn't be called into vcf by HC
haplotypecaller vcf
updated 3.4 years ago by 84k • written 3.4 years ago by ▴ 710
0
votes
2
replies
2.5k
views
Comment: C: Infer somatic mutations without normal control
3.5 years ago by CY ▴ 710
0
votes
1
reply
715
views
Dispersion shrinkage in DESeq2: LOESS instead of negative binomial based GLM?
RNA-SEQ DESeq
3.5 years ago by CY ▴ 710
1
vote
5
replies
670
views
Archieve of homologous nucleotide sequence across genome
sequence
updated 3.6 years ago by ▴ 130 • written 3.6 years ago by ▴ 710
0
votes
1
reply
670
views
Comment: C: Archieve of homologous nucleotide sequence across genome
3.6 years ago by CY ▴ 710
0
votes
0
replies
834
views
XHMM calls CNV on a number of normal samples
CNV XHH
3.6 years ago by CY ▴ 710
0
votes
0
replies
1.2k
views
Comment: C: Library size normalization during CNV calling from genomically doubled tumor tis
3.6 years ago by CY ▴ 710
0
votes
9
replies
1.2k
views
Library size normalization during CNV calling from genomically doubled tumor tissue
CNV
updated 3.6 years ago by ▴ 550 • written 3.6 years ago by ▴ 710
0
votes
1
reply
1.2k
views
Comment: C: Library size normalization during CNV calling from genomically doubled tumor tis
3.6 years ago by CY ▴ 710
1
vote
0
replies
909
views
Comment: C: Noisy CNV background in old FFPE sample
3.6 years ago by CY ▴ 710
1
vote
1
reply
909
views
Comment: C: Noisy CNV background in old FFPE sample
3.6 years ago by CY ▴ 710
6
votes
5
replies
909
views
Noisy CNV background in old FFPE sample
CNV FFPE
updated 3.6 years ago by ★ 2.8k • written 3.7 years ago by ▴ 710
0
votes
0
replies
658
views
Comment: C: Effect size in power analysis when dealing with Poisson based variant caller
3.7 years ago by CY ▴ 710
1
vote
3
replies
658
views
Effect size in power analysis when dealing with Poisson based variant caller
variant calling
updated 3.7 years ago by ▴ 550 • written 3.7 years ago by ▴ 710
0
votes
0
replies
929
views
Difference between mpileup and HaplotypeCaller -ERC BP_RESOLUTION
variant calling haplotypecaller mpileup
3.7 years ago by CY ▴ 710
3
votes
7
replies
1.0k
views
Why methylation sequencing requires much less sequencing depth than DNA-Seq?
methylation WGBS
updated 3.7 years ago by 8.2k • written 3.7 years ago by ▴ 710
0
votes
1
reply
1.0k
views
Comment: C: Why methylation sequencing requires much less sequencing depth than DNA-Seq?
3.7 years ago by CY ▴ 710
0
votes
1
reply
1.0k
views
Comment: C: Why methylation sequencing requires much less sequencing depth than DNA-Seq?
3.7 years ago by CY ▴ 710
0
votes
1
reply
1.1k
views
Comment: C: Why do so many biomarker based classifiers claim high accuracy but rarely used i
3.7 years ago by CY ▴ 710
18
votes
4
replies
1.1k
views
Why do so many biomarker based classifiers claim high accuracy but rarely used in clinical setting?
biomarker
3.8 years ago by CY ▴ 710
0
votes
1
reply
775
views
Mutated gene based pathway enrichment
enrichment mutation
updated 3.8 years ago by ▴ 990 • written 3.8 years ago by ▴ 710
0
votes
0
replies
653
views
Why seed and fuzzy-search in MIGEC?
MIGEC MUI tcr
3.9 years ago by CY ▴ 710
0
votes
0
replies
6.6k
views
Comment: C: Why can't use t-test for differential expression (negative binomial distribution
3.9 years ago by CY ▴ 710
0
votes
0
replies
6.6k
views
Comment: C: Why can't use t-test for differential expression (negative binomial distribution
3.9 years ago by CY ▴ 710
0
votes
2
replies
6.6k
views
Comment: C: Why can't use t-test for differential expression (negative binomial distribution
3.9 years ago by CY ▴ 710
0
votes
1
reply
6.6k
views
Comment: C: Why can't use t-test for differential expression (negative binomial distribution
3.9 years ago by CY ▴ 710
0
votes
1
reply
6.6k
views
Comment: C: Why can't use t-test for differential expression (negative binomial distribution
3.9 years ago by CY ▴ 710
0
votes
0
replies
6.6k
views
Comment: C: Why can't use t-test for differential expression (negative binomial distribution
3.9 years ago by CY ▴ 710
26
votes
17
replies
6.6k
views
Why can't use t-test for differential expression (negative binomial distribution assumed)
RNA-Seq
updated 3.9 years ago by 13k • written 3.9 years ago by ▴ 710
0
votes
1
reply
6.6k
views
Comment: C: Why can't use t-test for differential expression (negative binomial distribution
3.9 years ago by CY ▴ 710
2
votes
12
replies
1.5k
views
Multiple testing correction issue
multiple testing correction
updated 3.9 years ago by 13k • written 3.9 years ago by ▴ 710
0
votes
2
replies
1.5k
views
Comment: C: Multiple testing correction issue
3.9 years ago by CY ▴ 710
0
votes
0
replies
1.5k
views
Comment: C: Multiple testing correction issue
3.9 years ago by CY ▴ 710
275 results • Page 2 of 6
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6