User: english.server

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Posts by english.server

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Comment: C: In WGCNA, how to perform block-wise network construction but show the results us
... Thank you indeed very much. Very helpful comment. ...
written 28 days ago by english.server120
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Comment: C: In WGCNA, how to perform block-wise network construction but show the results us
... Thank you for your time and comments. I cant get `par(mfrow=c(1,3))` working: (after appending this code to the code above): par(mfrow= c(1,length(net$blockGenes))) for (i in 1:length (net$blockGenes)) { plotDendroAndColors(net$dendrograms[[i]], moduleColors[net$blockGenes[[i]]], ...
written 28 days ago by english.server120
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Comment: C: In WGCNA, how to perform block-wise network construction but show the results us
... You are right. There are 3 modules in my simulated data. My issue is that visualizing block-wise networks sing plotDendroAndColors should be done for networks separately and one does not obtain a one-glance image of data. ...
written 28 days ago by english.server120
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Comment: C: WGCNA Block-wise network construction but show the results using 1 dendrogram
... Thank you for your response. I enclose a reproducible code below: library(WGCNA) options(stringsAsFactors = FALSE) n.genes = 200 n.samples=50 set.seed(0) set.seed(0) expr= matrix(rnorm (n.samples*n.genes), n.samples) expr [,20:30]= expr[,30] expr [,120:130]= exp ...
written 28 days ago by english.server120
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In WGCNA, how to perform block-wise network construction but show the results using only 1 graph (1 dendrogram)?
... Hi there! is it possible to construct Block-wise networks in WGCNA and then show a continuous dendrogram for all genes? Cheers! ...
wgcna blockwise network construction written 28 days ago by english.server120
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Comment: C: WGCNA categorical trait with more than 2 levels.
... Thank you @Renesh for your response. ...
written 4 weeks ago by english.server120
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WGCNA categorical trait with more than 2 levels.
... Hi there! Is it possible to use categorical traits (such as ethnicity) in WGCNA analysis? If so, shall we encode them with 0s and 1s? what if the trait is not binary and has several levels? Perhaps use 1, 2, 3,4? Thank you in advance ...
wgcna categorical trait written 4 weeks ago by english.server120 • updated 4 weeks ago by Renesh1.5k
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Comment: C: How to reduce the number of genes for WGCNA analysis?
... thank you @Jean-Karim Heriche ...
written 4 weeks ago by english.server120
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Comment: C: Graphical output of Blast. What are grey and black lines?
... thank you @sangram_keshari . ...
written 9 weeks ago by english.server120
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Graphical output of Blast. What are grey and black lines?
... Hi there! I was wondering what is the black vertical line separating blue and red bars? How is it different from thin vertical grey line joining red -green bars? Thank you in advance.![enter image description here][1] [1]: https://i.imgur.com/oEwxEql.png ...
gaphical output blast written 9 weeks ago by english.server120 • updated 9 weeks ago by sangram_keshari120

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