User: Arnaud Ceol

gravatar for Arnaud Ceol
Arnaud Ceol840
Reputation:
840
Status:
Trusted
Location:
Milan, Italy
Website:
http://arnaudceol.word...
Twitter:
arnaudceolpro
Scholar ID:
Google Scholar Page
Last seen:
1 month, 2 weeks ago
Joined:
8 years, 3 months ago
Email:
a**************@gmail.com

Coordinator of the Bioinformatics Unit of the Department of Experimental Oncology, managing the bioinformatics platform, together with ICT and the research department. 

Posts by Arnaud Ceol

<prev • 73 results • page 1 of 8 • next >
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Answer: A: Error: Could not find Bowtie 2 index files (GRCh38.*.bt2l)
... I had the same problem, bowtie2 (version 2.3.4.3) was building .bt2 index by default. I had to use the parameter --large-index to obtain the bt2l index. ...
written 7 weeks ago by Arnaud Ceol840
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Answer: A: How can i download multiple SRA data by using windows 10?
... On windows, the easiest way is to use docker: see https://hub.docker.com/r/ncbi/sra-toolkit for instance. ...
written 3 months ago by Arnaud Ceol840
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Answer: A: How to Install HISAT2 on Mac OS X
... Save yourself a lot of time using conda, or better docker. You'll find how to do it here: [https://bioconda.github.io/recipes/hisat2/README.html][1] In case you don;t have docker or admin permissions on you mac, you can install miniconda: [enter link description here][2] If you finally want to sav ...
written 3 months ago by Arnaud Ceol840
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Job: Computer scientist or bioinformatician with strong computational background
... We are looking for a **computer scientist** or a bioinformatician with a **strong computation background** to join the bioinformatics unit of the IEO in Milan. The candidate will evolve in a research environment (next generation sequencing among others). The selected candidate will consolidate our t ...
web next-gen database docker job written 8 months ago by Arnaud Ceol840 • updated 6 months ago by wallssus0
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Job: Computer scientist or bioinformatician to join the bioinformatics unit of the European Institute of Oncology (IEO - Milan)
... We are looking for a junior **computer scientist** or bioinformatician to join the **bioinformatics unit** at the European Institute of Oncology in Milan (IEO). The bioinformatics unit is responsible for the management of the **bioinformatics platform**, including several web applications (LIMS, WP ...
hpc ngs unix web job written 15 months ago by Arnaud Ceol840
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Answer: A: Looking for clinically validated anticancer drugs list
... You could have a look at the Therapeutic target database: https://db.idrblab.org/ttd/. I've used it in the past without any filter, but I've seen it is possible to search for target AND disease. ...
written 20 months ago by Arnaud Ceol840
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Job: 2 Bioinformatics positions available at the European Institute of Oncology, Milan
... The Cancer Genomics working group of the Alleanza contro il Cancro national network is seeking 2 motivated bioinformaticians for positions based at the European Institute of Oncology (IEO) in Milan **BACKGROUND** Alleanza Contro il Cancro (ACC) is the largest oncology network in Italy, with 22 par ...
ngs cancer pipeline clinical genomics job written 21 months ago by Arnaud Ceol840
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Answer: A: Download dataset from DIP
... If you are interested into only a subset of interactions, you can use the psicquic viewer: http://www.ebi.ac.uk/Tools/webservices/psicquic/view/home.xhtml ...
written 2.3 years ago by Arnaud Ceol840
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Comment: C: A Group Of Protein Interaction
... Unfortunately, the MINT team has discontinued the original web interface. ...
written 2.5 years ago by Arnaud Ceol840
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Comment: C: Mutation processing by cbioportal
... Thanks, I found the post you mention https://www.biostars.org/p/220922/. My question is therefore some king of duplicate. I had also seen the doc in the cbioportal's faq, but unfortunately it doesn't say a lot about how the data is processed. My guess is that cbioportal shows all mutations identif ...
written 2.5 years ago by Arnaud Ceol840

Latest awards to Arnaud Ceol

Popular Question 6 months ago, created a question with more than 1,000 views. For 2 Bioinformatics positions available at the European Institute of Oncology, Milan
Popular Question 8 months ago, created a question with more than 1,000 views. For genome version in cbioportal
Popular Question 12 months ago, created a question with more than 1,000 views. For genome version in cbioportal
Good Answer 20 months ago, created an answer that was upvoted at least 5 times. For A: What Happened To The Bind (Biological Interaction Network) Database And Is Acces
Scholar 20 months ago, created an answer that has been accepted. For A: Bioinformatics software distribution
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: What Happened To The Bind (Biological Interaction Network) Database And Is Acces
Scholar 2.6 years ago, created an answer that has been accepted. For A: Bioinformatics software distribution
Teacher 2.6 years ago, created an answer with at least 3 up-votes. For A: What Happened To The Bind (Biological Interaction Network) Database And Is Acces
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Asking The Developers Before Asking Biostars
Teacher 5.5 years ago, created an answer with at least 3 up-votes. For A: Go Enrichment From Protein Id
Appreciated 5.5 years ago, created a post with more than 5 votes. For Asking The Developers Before Asking Biostars
Good Answer 5.5 years ago, created an answer that was upvoted at least 5 times. For A: What Happened To The Bind (Biological Interaction Network) Database And Is Acces
Popular Question 5.5 years ago, created a question with more than 1,000 views. For Asking The Developers Before Asking Biostars
Supporter 5.5 years ago, voted at least 25 times.
Teacher 5.5 years ago, created an answer with at least 3 up-votes. For A: Go Enrichment From Protein Id
Teacher 5.5 years ago, created an answer with at least 3 up-votes. For A: Gene Disease (Cancer) Association
Teacher 5.5 years ago, created an answer with at least 3 up-votes. For A: Protein-Protein Interaction Prediction
Teacher 5.5 years ago, created an answer with at least 3 up-votes. For A: How To Know Percentage Of Identity Between Every Pair Of Orthologous Genes In Se
Teacher 5.5 years ago, created an answer with at least 3 up-votes. For A: What Happened To The Bind (Biological Interaction Network) Database And Is Acces
Teacher 5.5 years ago, created an answer with at least 3 up-votes. For A: Converting A Set Of Protein Ids To Gene Ids
Autobiographer 5.5 years ago, has more than 80 characters in the information field of the user's profile.

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