User: Arnaud Ceol

gravatar for Arnaud Ceol
Arnaud Ceol850
Reputation:
850
Status:
Trusted
Location:
Milan, Italy
Website:
http://arnaudceol.word...
Twitter:
arnaudceolpro
Scholar ID:
Google Scholar Page
Last seen:
1 month ago
Joined:
8 years, 11 months ago
Email:
a**************@gmail.com

Coordinator of the Bioinformatics Unit of the Department of Experimental Oncology, managing the bioinformatics platform, together with ICT and the research department. 

Posts by Arnaud Ceol

<prev • 73 results • page 2 of 8 • next >
0
votes
1
answer
675
views
1
answers
Answer: A: miRNA and mRNA
... If you are interested in cancer, you can check the GDC portal: it contains both. https://portal.gdc.cancer.gov/search/s?facetTab=files ...
written 3.1 years ago by Arnaud Ceol850
1
vote
1
answer
1.6k
views
1
answer
Mutation processing by cbioportal
... Hi, I got lost with the mutations from TCGA made available from cbioportal (http://www.cbioportal.org/) and from the gdc portal (http://gdc-portal.nci.nih.gov/), and I've the feeling I'm missing something. My problem is that I found different number of mutations, although the source should be the s ...
cbioportab maf tcga gdc written 3.1 years ago by Arnaud Ceol850 • updated 3.1 years ago by igor10k
0
votes
2
answers
1.0k
views
2
answers
Answer: A: subcellular localization human / Mouse / Rat
... You may check the Compartment database: http://compartments.jensenlab.org/ (this is a Stringdb's style database for sub cellular compartments). ...
written 3.1 years ago by Arnaud Ceol850
1
vote
2
answers
5.2k
views
2
answers
Answer: A: How to reorder dendrogram (R)?
... I've used a few time dendosort ([https://f1000research.com/articles/3-177/v1][1] and [https://cran.r-project.org/web/packages/dendsort/index.html][2]), this is a nice library to sort your dendograms. You should have a look. [1]: https://f1000research.com/articles/3-177/v1 [2]: https://cran.r-p ...
written 3.1 years ago by Arnaud Ceol850
1
vote
1
answer
532
views
1
answers
Answer: A: adv of RPKM for gene expression profile
... I found this useful post about this topic some time ago: https://haroldpimentel.wordpress.com/2014/05/08/what-the-fpkm-a-review-rna-seq-expression-units/ , it should answer your question. ...
written 3.2 years ago by Arnaud Ceol850
0
votes
3
answers
2.6k
views
3
answers
Answer: A: database for enhancer sequences in human/mammal genomes
... You may start with the results of ChromHMM (http://compbio.mit.edu/ChromHMM/) or Segway (http://noble.gs.washington.edu/proj/encyclopedia/). In both cases, we are talking about prediction (by machine learning), rather than a proper knowledge base. ...
written 3.2 years ago by Arnaud Ceol850
1
vote
10
answers
2.4k
views
10
answers
Comment: C: Bioinformatics software distribution
... "web/whatever application to use straight forward": I'm justing meaning any application (either desktop or web based), that can be used out of the box (as opposite to a library that should be integrated into other software). As far as I know, it is not possible to create plugins for Samtool and Fa ...
written 3.2 years ago by Arnaud Ceol850
2
votes
0
answers
584
views
0
answers
DAS 2 interface: is it used?
... Hello, A few years ago there was an attempt to create a new enhanced version of the DAS protocol to **share genomic data**, called DAS/2 ([http://www.das2.org/][1]). I know at least one implementation of a **DAS/2** server (**Genopub**: [some documentation here][2]), with a flash based web interfa ...
das/2 genopub igb das written 3.2 years ago by Arnaud Ceol850
2
votes
10
answers
2.4k
views
10
answers
Answer: A: Bioinformatics software distribution
... > UPDATE: two more questions: > > 1) What do you think about having access for your tool as a library or > a package for python, ruby, perl, R, other languages? Is this > important and needed? > This is often at least really useful. It means that you can integrate it in your own ...
written 3.2 years ago by Arnaud Ceol850
0
votes
1
answer
1.0k
views
1
answers
Answer: A: Gene Ontology visualisation webservice in 2017
... Did you look at Panther? http://www.pantherdb.org/ ...
written 3.2 years ago by Arnaud Ceol850

Latest awards to Arnaud Ceol

Popular Question 6 months ago, created a question with more than 1,000 views. For 2 Bioinformatics positions available at the European Institute of Oncology, Milan
Popular Question 13 months ago, created a question with more than 1,000 views. For 2 Bioinformatics positions available at the European Institute of Oncology, Milan
Popular Question 15 months ago, created a question with more than 1,000 views. For genome version in cbioportal
Popular Question 20 months ago, created a question with more than 1,000 views. For genome version in cbioportal
Good Answer 2.3 years ago, created an answer that was upvoted at least 5 times. For A: What Happened To The Bind (Biological Interaction Network) Database And Is Acces
Scholar 2.3 years ago, created an answer that has been accepted. For A: Bioinformatics software distribution
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: What Happened To The Bind (Biological Interaction Network) Database And Is Acces
Scholar 3.2 years ago, created an answer that has been accepted. For A: Bioinformatics software distribution
Teacher 3.2 years ago, created an answer with at least 3 up-votes. For A: What Happened To The Bind (Biological Interaction Network) Database And Is Acces
Popular Question 4.0 years ago, created a question with more than 1,000 views. For Asking The Developers Before Asking Biostars
Teacher 6.1 years ago, created an answer with at least 3 up-votes. For A: Go Enrichment From Protein Id
Appreciated 6.1 years ago, created a post with more than 5 votes. For Asking The Developers Before Asking Biostars
Good Answer 6.1 years ago, created an answer that was upvoted at least 5 times. For A: What Happened To The Bind (Biological Interaction Network) Database And Is Acces
Popular Question 6.1 years ago, created a question with more than 1,000 views. For Asking The Developers Before Asking Biostars
Supporter 6.1 years ago, voted at least 25 times.
Teacher 6.1 years ago, created an answer with at least 3 up-votes. For A: Go Enrichment From Protein Id
Teacher 6.1 years ago, created an answer with at least 3 up-votes. For A: Gene Disease (Cancer) Association
Teacher 6.1 years ago, created an answer with at least 3 up-votes. For A: Protein-Protein Interaction Prediction
Teacher 6.1 years ago, created an answer with at least 3 up-votes. For A: How To Know Percentage Of Identity Between Every Pair Of Orthologous Genes In Se
Teacher 6.1 years ago, created an answer with at least 3 up-votes. For A: What Happened To The Bind (Biological Interaction Network) Database And Is Acces
Teacher 6.1 years ago, created an answer with at least 3 up-votes. For A: Converting A Set Of Protein Ids To Gene Ids
Autobiographer 6.1 years ago, has more than 80 characters in the information field of the user's profile.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1271 users visited in the last hour