User: hasani.iut6

gravatar for hasani.iut6
hasani.iut640
Reputation:
40
Status:
New User
Location:
Iran, Islamic Republic Of
Last seen:
7 months, 1 week ago
Joined:
4 years, 2 months ago
Email:
h**********@gmail.com

Posts by hasani.iut6

<prev • 40 results • page 1 of 4 • next >
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Downloading and analyzing bovine/cattle mircoRNAs
... Hi all I want to download microRNA of bovine/cattle. I used [miRBase site][1]. I browsed the site for the "Bos taurus" and int the bottom of the page I chose mature sequences. Did I do right? Know, I want to find the target mRNA of these microRNAs on another animal. So I have to align these microR ...
mircrorna cattle bovine written 7 months ago by hasani.iut640 • updated 7 months ago by h.mon29k
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(Closed) Approved genetic biomarkers of tumor cell and their drugs
... Hi I want to find approved genetics biomarker of tumor cell (genes and genetical variants) for every cancer type and their related drugs. I searched a lot in FDA but I could not find anything. Please help me where can I find this data? Thanks all. ...
genetic biomarkers fda written 11 months ago by hasani.iut640
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Variant calling by using samtools and bcftools
... Hi all I want to do variant calling by using samtools and bcftools. As the pipelines that I found on the internet, I should run the following commands: 1. samtools view -bS aligned.sam > aligned.bam 2. samtools sort aligned.bam aligned_sorted 3. samtools faidx genome.fasta 4. s ...
variant calling samtools bcftools written 12 months ago by hasani.iut640 • updated 29 days ago by Lakshman Teja40
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Annotation database for plant microrna
... Hi, I am working on plant microRNAs and I am interested to know more information about microRNAs such as genome region of plants that encoding the microRNAs, targets of microRNAs and a specific microRNA present in which part of the plant(root, stem, fruit)? Is there any database that contains this ...
annotation database microrna written 13 months ago by hasani.iut640
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Proper journal for publication
... I have worked on a paper that is about the influence of plant microRNA on the human. I prepared a good database of planet microRNA then I did some bioinformatics analysis on them and finally I interpret the result in the biology aspect but I haven't any experimental validation. I have already tried ...
publication journal written 16 months ago by hasani.iut640
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Comment: C: Finding some specific SNPs in aligned sam file
... Yes, you are right and maybe I said my question wrongly. I want to find my specific SNPs in aligned reads. ...
written 17 months ago by hasani.iut640
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Comment: C: Finding some specific SNPs in aligned sam file
... Thank you for your response fin. Actually, I want to know which reads contain my which SNPs and I want to know which nucleotide is in my aligned reads in the position of SNPs. ...
written 17 months ago by hasani.iut640
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Comment: C: Finding some specific SNPs in aligned sam file
... Thank you for your response and for saying about dbSNP151. Actually, I am interested to find some specific SNPs in my aligned reads. I don't want to do variant calling in my aligned reads. ...
written 17 months ago by hasani.iut640
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Comment: C: Finding some specific SNPs in aligned sam file
... Using GATK cause to variant calling but I have a list of SNPs, that I am interested in find them in my aligned reads ...
written 17 months ago by hasani.iut640
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Finding some specific SNPs in aligned sam file
... Hi I have used ***SNPlocs.Hsapiens.dbSNP144.GRCh38*** package in Rstudio to access to the SNPs of chromosome one, furthermore I have aligned sam file that I am interested to find my selected SNPs in them. In other words, for each aligned read, I'm interested to find all of my SNPs in them and also ...
sam file read snp written 17 months ago by hasani.iut640 • updated 17 months ago by Benn7.9k

Latest awards to hasani.iut6

Great Question 11 months ago, created a question with more than 5,000 views. For Downloading SRA data by prefetch command
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Downloading SRA data by prefetch command
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Reading soft file data to R from a downloaded file
Popular Question 2.3 years ago, created a question with more than 1,000 views. For looking for a bioinformatics project to do during military rotation
Scholar 2.7 years ago, created an answer that has been accepted. For A: Reading soft file data to R from a downloaded file
Popular Question 4.1 years ago, created a question with more than 1,000 views. For Downloading SRA data by prefetch command

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