User: Ibrahim Tanyalcin

Reputation:
820
Status:
Trusted
Location:
Belgium
Website:
http://i-pv.org/
Last seen:
6 hours ago
Joined:
1 year, 11 months ago
Email:
t****************@gmail.com

I have graduated from Izmir Fen Lisesi (Izmir High School of Science) in 2004. I completed my bachelor in Molecular Biology and Genetics in 2009 fromBogazici University. Following bachelor, I completed my master degree at Vrije Universiteit Brussel (VUB) about Cell and Gene Therapy in 2011. I am currently a PhD student in VUB working on Malformations of Cortical Development. I guess this is as short as it gets:)
I love combining art and science so if you've got some ideas or want to work on a project:
Drop a message at: ibrahim.tanyalcin@i-pv.org
Find me in linkedin: https://be.linkedin.com/in/ibrahimtanyalcin
Find me in researchgate: https://www.researchgate.net/profile/Ibrahim_Tanyalcin

Posts by Ibrahim Tanyalcin

<prev • 109 results • page 1 of 11 • next >
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Comment: C: Displaying/plotting numerous biological comparisons
... Maybe this can help: [lexicon-rainbow][1]. And here is the [github][2]. [1]: https://www.biostars.org/p/271040/ [2]: https://github.com/IbrahimTanyalcin/lexicon-rainbow ...
written 2 days ago by Ibrahim Tanyalcin820
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Comment: C: BRCA1 and BRCA2 database's for NGS diagnostics purposes
... In case you want an overview of all mutations (deletion, insertion, indel and SNV) from Ensembl Variation dataset and do some 3d analysis on the position of the mutations for [BRCA1][1] [1]: http://i-pv.org/1_45/BRCA1 ...
written 5 weeks ago by Ibrahim Tanyalcin820
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Tool: lexicon - collection of data visualization components written in Javascript
... Lexicon is a collection of libraries I have written during this year for the [Mutaframe][1] project. Each library is adept at displaying a particular data set. I have started documenting these libraries and I will update here as I proceed. library-name for links lexicon-r ...
es5 json visualization tool javascript written 6 weeks ago by Ibrahim Tanyalcin820
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Comment: C: online software availability
... I think he wants to get a list of possible SNVs at a position from the given codon in the cDNA so he doesnt have to go through the ones that aren't biologically possible for an SNV. ...
written 7 weeks ago by Ibrahim Tanyalcin820
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Comment: C: online software availability
... Sphingopyxis sp. (strain 113P3) with Uniprot ID of [Q588Z2][1] ? [1]: http://www.uniprot.org/uniprot/Q588Z2 ...
written 7 weeks ago by Ibrahim Tanyalcin820
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Answer: A: online software availability
... Which protein are you interested in? I have couple graphs where you can check that, if I have the one you are looking for maybe I can help ...
written 7 weeks ago by Ibrahim Tanyalcin820
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Comment: C: I-PV: a CIRCOS module for interactive protein sequence visualization
... Dear Biostars Community, I-PV and INDORIL is now on [thinkable.org][thinkable] . If you'd like to support the project for further development, you can vote from the link. Thank you, [thinkable]: https://www.thinkable.org/submission_entries/l3jBVL3G ...
written 7 weeks ago by Ibrahim Tanyalcin820
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Comment: C: I-PV: a CIRCOS module for interactive protein sequence visualization
... Dear Biostars Community, I-PV is now on [thinkable.org][thinkable] . If you'd like to support the project for further development, you can vote from the link. Thank you, [thinkable]: https://www.thinkable.org/submission_entries/l3jBVL3G ...
written 7 weeks ago by Ibrahim Tanyalcin820
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Answer: A: How to make a nice mutation overview figure like this?
... Hi Floris. I worked on a similar project some years ago. Does [this][1] sort of representation work for you? You can see some other examples at [this][2] post as well. There is also the [github][3] repository in case you want to take a look at the project files before you download anything. This is ...
written 7 weeks ago by Ibrahim Tanyalcin820
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Answer: A: Any great tutorials on how to download sift/provean on your computer?
... Hi William, If you need the polyphen2 and the sift scores for a list of proteins with either Ensembl ID, Uniprot ID or RefSeq, I would try the Ensembl [Biomart][1]. I use these for plotting these scores for my protein of interest. Here is sample video from my own [work][2]. In Biomart you are advis ...
written 9 weeks ago by Ibrahim Tanyalcin820

Latest awards to Ibrahim Tanyalcin

Centurion 7 weeks ago, created 100 posts.
Scholar 3 months ago, created an answer that has been accepted. For A: Bioinformatics / Computational Biology PhD
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How To Create Mutation Diagram In R Or In Any Tools?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How To Create Mutation Diagram In R Or In Any Tools?
Popular Question 3 months ago, created a question with more than 1,000 views. For Blob.js - a small javascript library to draw random blobs/shapes
Scholar 3 months ago, created an answer that has been accepted. For A: Bioinformatics / Computational Biology PhD
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How To Create Mutation Diagram In R Or In Any Tools?
Popular Question 4 months ago, created a question with more than 1,000 views. For I-PV: a CIRCOS module for interactive protein sequence visualization
Appreciated 17 months ago, created a post with more than 5 votes. For I-PV: a CIRCOS module for interactive protein sequence visualization
Commentator 17 months ago, created a comment with at least 3 up-votes. For A: I-PV: a CIRCOS module for interactive protein sequence visualization
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: How To Create Mutation Diagram In R Or In Any Tools?
Scholar 19 months ago, created an answer that has been accepted. For A: I-PV: a CIRCOS module for interactive protein sequence visualization
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: How To Create Mutation Diagram In R Or In Any Tools?
Scholar 20 months ago, created an answer that has been accepted. For A: I-PV: a CIRCOS module for interactive protein sequence visualization
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: How To Create Mutation Diagram In R Or In Any Tools?
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: How To Create Mutation Diagram In R Or In Any Tools?
Scholar 24 months ago, created an answer that has been accepted. For A: I-PV: a CIRCOS module for interactive protein sequence visualization
Autobiographer 24 months ago, has more than 80 characters in the information field of the user's profile.

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