User: Ibrahim Tanyalcin

Reputation:
1,140
Status:
Trusted
Location:
Belgium
Website:
http://i-pv.org/
Last seen:
1 month, 3 weeks ago
Joined:
5 years ago
Email:
t****************@gmail.com

I have graduated from Izmir Fen Lisesi (Izmir High School of Science) in 2004. I completed my bachelor in Molecular Biology and Genetics in 2009 fromBogazici University. Following bachelor, I completed my master degree at Vrije Universiteit Brussel (VUB) about Cell and Gene Therapy in 2011. I am currently a PhD student in VUB working on Malformations of Cortical Development. I guess this is as short as it gets:)
I love combining art and science so if you've got some ideas or want to work on a project:
Drop a message at: ibrahim.tanyalcin@i-pv.org
Find me in linkedin: https://be.linkedin.com/in/ibrahimtanyalcin
Find me in researchgate: https://www.researchgate.net/profile/Ibrahim_Tanyalcin

Posts by Ibrahim Tanyalcin

<prev • 123 results • page 1 of 13 • next >
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Answer: A: Petition to demand that the Federal German Government release all genomic data o
... Just a second, I recently did [this](https://deogen2.mutaframe.com/tools/covid19) project with ~160 genomes from NCBI and I thought that's about it. As far as I know researchers are free to upload the sequences to NCBI wherever they are. Are you guys trying to tell that there are more genomic data l ...
written 6 months ago by Ibrahim Tanyalcin1.1k
0
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4
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794
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4
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Answer: A: Virus Genome Length and GC Content of SARS-COV-2 causing COVID-19
... Check the fourth panel, in the below link, I think it makes easier to see the the nucleotide/amino acid sequence and frames they are encoded in. https://deogen2.mutaframe.com/tools/covid19 ...
written 6 months ago by Ibrahim Tanyalcin1.1k
3
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0
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Tool: Sars-Cov-2 Genome & ACE 2 Exploration
... Published a small extension of MutaFrame, to: - Show conserved regions and SNPs of the Sars-Cov-2 receptor ACE - 2 - Show conserved regions of the Sars-Cov-2 spike protein based on comparison of Sars-Cov-1/HIV - Different isoforms of ACE 2 - Alignment of 166 Sars-Cov-2 genomes, and mutation hot sp ...
genome sequence alignment tool snp written 6 months ago by Ibrahim Tanyalcin1.1k
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3
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Answer: A: How to get a list of snp associated with any known cancer from NCBI with chromos
... 6 years ago I've done [this](https://www.biostars.org/p/163832/) tool: http://i-pv.org/ https://github.com/IbrahimTanyalcin/I-PV here is an example: http://i-pv.org/1_45/NFKB1 You can get the files as shown here: https://www.youtube.com/watch?v=v7bLO1nIrIk&t=259s ...
written 10 months ago by Ibrahim Tanyalcin1.1k
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0
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Tool: MutaFrame - ORF finder
... This is an add-on module for [MutaFrame](https://www.biostars.org/p/249691/), the open reading frame finder. It allows you to plug in mRNA/protein sequence and search whether the protein is encoded. You can add as many panels as you want, and they will be updated in the background. ![sample_gif](ht ...
gene sequence protein tool written 10 months ago by Ibrahim Tanyalcin1.1k
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Comment: C: Multiple Sequence Alignment in the Browser with custom monospace fonts
... ## Published in JOSS, for details: ### [Lexicon-Mono-Seq, DOM Text Based Async MSA Viewer](https://joss.theoj.org/papers/9fbf126b501ad921825f755732450278) ...
written 15 months ago by Ibrahim Tanyalcin1.1k
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Comment: C: How can I get a list of all SNPs from a gene of my interest?
... Hi there, sorry for the delay. I think I had a script that filters duplicates (https://github.com/IbrahimTanyalcin/I-PV/blob/master/ipv/script/invokeCircos.pl), though it is used for visualization. You can do the same with python/perl or whatever you fancy. ...
written 17 months ago by Ibrahim Tanyalcin1.1k
0
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911
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Comment: C: Multiple Sequence Alignment in the Browser with custom monospace fonts
... Added 1 static image. ...
written 18 months ago by Ibrahim Tanyalcin1.1k
1
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0
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911
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0
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Tool: Multiple Sequence Alignment in the Browser with custom monospace fonts
... This is a small tool I've been working on lately, to visualize multiple sequence alignment without canvas, which makes the text blurry. The tool renders the data asynchronously, so you can have very long sequences (1000 x 100 000) and scroll without significant fps drop. There is 1 static function ...
sequence alignment msa tool written 18 months ago by Ibrahim Tanyalcin1.1k
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Answer: A: Data Visualization Web App
... - If you are from Python background there is Django and Flask. And of course many other alternatives. - If you are used to php etc, there is Lavarel. - Since you are not from javascript background, there is no need to dig deeper into MERN stack (mangoose, express, react node) IMO, if you have a ve ...
written 2.8 years ago by Ibrahim Tanyalcin1.1k

Latest awards to Ibrahim Tanyalcin

Scholar 4 months ago, created an answer that has been accepted. For A: Bioinformatics / Computational Biology PhD
Scholar 11 months ago, created an answer that has been accepted. For A: Bioinformatics / Computational Biology PhD
Scholar 11 months ago, created an answer that has been accepted. For A: Bioinformatics / Computational Biology PhD
Appreciated 11 months ago, created a post with more than 5 votes. For A: How can I get a list of all SNPs from a gene of my interest?
Good Answer 11 months ago, created an answer that was upvoted at least 5 times. For A: What to do after M.Sc in Bioinformatics ?
Guru 11 months ago, received more than 100 upvotes.
Scholar 11 months ago, created an answer that has been accepted. For A: Bioinformatics / Computational Biology PhD
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: How To Create Mutation Diagram In R Or In Any Tools?
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: How To Create Mutation Diagram In R Or In Any Tools?
Popular Question 17 months ago, created a question with more than 1,000 views. For Blob.js - a small javascript library to draw random blobs/shapes
Appreciated 21 months ago, created a post with more than 5 votes. For lexicon - collection of data visualization components written in Javascript
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: How To Create Mutation Diagram In R Or In Any Tools?
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Blob.js - a small javascript library to draw random blobs/shapes
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: How To Create Mutation Diagram In R Or In Any Tools?
Appreciated 2.8 years ago, created a post with more than 5 votes. For I-PV: a CIRCOS module for interactive protein sequence visualization
Centurion 3.2 years ago, created 100 posts.
Scholar 3.3 years ago, created an answer that has been accepted. For A: Bioinformatics / Computational Biology PhD
Teacher 3.3 years ago, created an answer with at least 3 up-votes. For A: How To Create Mutation Diagram In R Or In Any Tools?
Teacher 3.3 years ago, created an answer with at least 3 up-votes. For A: How To Create Mutation Diagram In R Or In Any Tools?
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Blob.js - a small javascript library to draw random blobs/shapes
Scholar 3.4 years ago, created an answer that has been accepted. For A: Bioinformatics / Computational Biology PhD
Teacher 3.4 years ago, created an answer with at least 3 up-votes. For A: How To Create Mutation Diagram In R Or In Any Tools?
Popular Question 3.4 years ago, created a question with more than 1,000 views. For I-PV: a CIRCOS module for interactive protein sequence visualization
Appreciated 4.4 years ago, created a post with more than 5 votes. For I-PV: a CIRCOS module for interactive protein sequence visualization
Commentator 4.4 years ago, created a comment with at least 3 up-votes. For A: I-PV: a CIRCOS module for interactive protein sequence visualization

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