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1
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0
replies
6.1k
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Comment: C: Error when using Bedtools fisher on sorted bed files
updated 5.8 years ago by 45k • written 9.7 years ago by ★ 2.0k
1
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0
replies
13k
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Comment: C: Meaning of Chromatin state
updated 5.8 years ago by 45k • written 9.7 years ago by ★ 2.0k
7
votes
11
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11k
views
7 follow
how to merge overlapping intervals in a bedgraph file
sequence bedtools
updated 3.2 years ago by 45k • written 10.0 years ago by ★ 2.0k
0
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0
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11k
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Comment: C: HOMER find motifs from BED data
updated 5.9 years ago by 45k • written 9.8 years ago by ★ 2.0k
0
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0
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3.2k
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Comment: C: Chipseq overlap of peaks
updated 5.9 years ago by 45k • written 10.0 years ago by ★ 2.0k
0
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0
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2.3k
views
Answer: A: pipeline of analyses to identify functional loops of chromosomes
updated 5.9 years ago by 45k • written 10.0 years ago by ★ 2.0k
0
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0
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3.4k
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Answer: A: Finding instances of motifs near peaks
updated 5.9 years ago by 45k • written 10.0 years ago by ★ 2.0k
0
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0
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6.5k
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Comment: C: the "major" problem of gene identifiers conversion
updated 5.9 years ago by 45k • written 10.0 years ago by ★ 2.0k
2
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1
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6.5k
views
Answer: A: the "major" problem of gene identifiers conversion
updated 5.9 years ago by 45k • written 10.0 years ago by ★ 2.0k
0
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0
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11k
views
Comment: C: how to merge overlapping intervals in a bedgraph file
updated 6.0 years ago by 45k • written 10.0 years ago by ★ 2.0k
0
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0
replies
7.6k
views
Comment: C: DNA binding site motif database
updated 6.0 years ago by 45k • written 10.0 years ago by ★ 2.0k
0
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1
reply
5.3k
views
Answer: A: count the number of transcription factor binding sites
updated 6.0 years ago by 45k • written 10.0 years ago by ★ 2.0k
0
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1
reply
4.1k
views
Comment: C: Associate peak score to gene
updated 6.0 years ago by 45k • written 10.0 years ago by ★ 2.0k
6
votes
0
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2.4k
views
Answer: A: what is the meaning of "degenerative nature" of Chip-seq
updated 6.0 years ago by 45k • written 10.1 years ago by ★ 2.0k
1
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1
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4.1k
views
Answer: A: Associate peak score to gene
updated 6.0 years ago by 45k • written 10.1 years ago by ★ 2.0k
4
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2
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5.2k
views
Answer: A: Analysis Big Data from Hi-C--> a way to find significant interaction ?
updated 6.0 years ago by 45k • written 10.3 years ago by ★ 2.0k
1
vote
0
replies
11k
views
Answer: A: How do I compute the effective genome size?
updated 6.0 years ago by 45k • written 10.1 years ago by ★ 2.0k
0
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1
reply
7.8k
views
Comment: C: Making TSS plots for some genes for a particular histone mark
updated 6.0 years ago by 45k • written 10.2 years ago by ★ 2.0k
0
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0
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2.5k
views
Answer: A: ChIP-Seq alignment with random site for duplicated
updated 6.0 years ago by 45k • written 10.3 years ago by ★ 2.0k
0
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0
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2.9k
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Answer: A: mapping PE or SE?
updated 6.0 years ago by 45k • written 10.4 years ago by ★ 2.0k
1
vote
0
replies
41k
views
Comment: C: Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
updated 6.1 years ago by 45k • written 13.5 years ago by ★ 2.0k
1
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0
replies
4.5k
views
Answer: A: Functional Classification Of Protein Complexes
updated 6.1 years ago by 45k • written 13.7 years ago by ★ 2.0k
4
votes
0
replies
7.8k
views
Answer: A: Single Cell RNA Seq. Analysis
updated 6.5 years ago by 45k • written 6.6 years ago by ★ 2.0k
0
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1
reply
7.6k
views
Answer: A: Cannot read loom file in scanpy
6.6 years ago by Fidel ★ 2.0k
3
votes
1
reply
6.3k
views
Answer: A: How quantitative is Chip-seq?
updated 8.1 years ago by 105k • written 9.5 years ago by ★ 2.0k
0
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0
replies
3.5k
views
Comment: C: TAD calling with HiCExplorer - TypeError in hicFindTADs TAD_score
8.2 years ago by Fidel ★ 2.0k
1
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0
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3.5k
views
Comment: C: TAD calling with HiCExplorer - TypeError in hicFindTADs TAD_score
8.2 years ago by Fidel ★ 2.0k
1
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0
replies
6.2k
views
Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
8.8 years ago by Fidel ★ 2.0k
2
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1
reply
6.2k
views
Answer: A: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
8.8 years ago by Fidel ★ 2.0k
1
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1
reply
6.2k
views
Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
8.8 years ago by Fidel ★ 2.0k
0
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1
reply
6.2k
views
Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
8.8 years ago by Fidel ★ 2.0k
0
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1
reply
6.2k
views
Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
8.8 years ago by Fidel ★ 2.0k
0
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1
reply
6.2k
views
Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
8.8 years ago by Fidel ★ 2.0k
6
votes
1
reply
7.7k
views
Answer: A: Do specialized Hi-C databases exist?
8.8 years ago by Fidel ★ 2.0k
2
votes
0
replies
8.6k
views
Answer: A: TUTORIALS about Hi-C data analysis
8.8 years ago by Fidel ★ 2.0k
8
votes
12
replies
6.2k
views
How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
bwa enzyme
8.8 years ago by Fidel ★ 2.0k
3
votes
0
replies
10k
views
Answer: A: ChIP-Seq TSS Line Plot
9.0 years ago by Fidel ★ 2.0k
0
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0
replies
1.9k
views
Comment: C: Hi-C resolution and bin count > 0 for ICE correction
9.4 years ago by Fidel ★ 2.0k
2
votes
1
reply
2.6k
views
Answer: A: Finding histone modification enrichment specific loci using modENCODE data
9.4 years ago by Fidel ★ 2.0k
0
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0
replies
3.0k
views
Comment: C: How to separate chip-seq peaks which are enriched for known TFs motifs from give
9.5 years ago by Fidel ★ 2.0k
2
votes
1
reply
3.0k
views
Comment: C: Pysam: Determine intra-read-position of Base at Pileupsite
9.5 years ago by Fidel ★ 2.0k
0
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0
replies
4.2k
views
Comment: C: Annotate each peak to gene starts within 10 kb of the peak with python ?
9.5 years ago by Fidel ★ 2.0k
0
votes
0
replies
5.4k
views
Comment: C: IGV resizing tracks
9.5 years ago by Fidel ★ 2.0k
1
vote
0
replies
2.5k
views
Answer: A: Error for read density visualization
9.5 years ago by Fidel ★ 2.0k
2
votes
0
replies
5.2k
views
Comment: C: Open-source tools for GO enrichment in non-model organisms
9.5 years ago by Fidel ★ 2.0k
5
votes
3
replies
59k
views
Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
9.5 years ago by Fidel ★ 2.0k
0
votes
0
replies
7.9k
views
Comment: C: Chip-Seq Peak hight difference between BED and BW file formats.
9.6 years ago by Fidel ★ 2.0k
3
votes
0
replies
3.2k
views
Answer: A: Paired-end data with different length
9.6 years ago by Fidel ★ 2.0k
1
vote
0
replies
3.2k
views
Comment: C: Separating gene list into chromatin domains and analysing separately within each
9.6 years ago by Fidel ★ 2.0k
4
votes
1
reply
59k
views
Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
9.6 years ago by Fidel ★ 2.0k
159 results • Page 1 of 4
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