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1
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5.4k
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Comment: C: Error when using Bedtools fisher on sorted bed files
updated 4.7 years ago by 44k • written 8.6 years ago by ★ 2.0k
1
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0
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12k
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Comment: C: Meaning of Chromatin state
updated 4.7 years ago by 44k • written 8.6 years ago by ★ 2.0k
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0
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9.5k
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Comment: C: HOMER find motifs from BED data
updated 4.7 years ago by 44k • written 8.6 years ago by ★ 2.0k
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0
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2.9k
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Comment: C: Chipseq overlap of peaks
updated 4.8 years ago by 44k • written 8.8 years ago by ★ 2.0k
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0
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3.9k
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Comment: C: the "major" problem of gene identifiers conversion
updated 4.8 years ago by 44k • written 8.9 years ago by ★ 2.0k
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0
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9.0k
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Comment: C: how to merge overlapping intervals in a bedgraph file
updated 4.8 years ago by 44k • written 8.9 years ago by ★ 2.0k
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0
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6.5k
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Comment: C: DNA binding site motif database
updated 4.8 years ago by 44k • written 8.9 years ago by ★ 2.0k
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1
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3.5k
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Comment: C: Associate peak score to gene
updated 4.8 years ago by 44k • written 8.9 years ago by ★ 2.0k
0
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1
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6.5k
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Comment: C: Making TSS plots for some genes for a particular histone mark
updated 4.8 years ago by 44k • written 9.1 years ago by ★ 2.0k
1
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0
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38k
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Comment: C: Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
updated 5.0 years ago by 44k • written 12.3 years ago by ★ 2.0k
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0
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2.9k
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Comment: C: TAD calling with HiCExplorer - TypeError in hicFindTADs TAD_score
7.0 years ago by Fidel ★ 2.0k
1
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0
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2.9k
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Comment: C: TAD calling with HiCExplorer - TypeError in hicFindTADs TAD_score
7.0 years ago by Fidel ★ 2.0k
1
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0
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5.1k
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Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.7 years ago by Fidel ★ 2.0k
1
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1
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5.1k
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Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.7 years ago by Fidel ★ 2.0k
0
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1
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5.1k
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Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.7 years ago by Fidel ★ 2.0k
0
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1
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5.1k
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Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.7 years ago by Fidel ★ 2.0k
0
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1
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5.1k
views
Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.7 years ago by Fidel ★ 2.0k
0
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0
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1.6k
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Comment: C: Hi-C resolution and bin count > 0 for ICE correction
8.3 years ago by Fidel ★ 2.0k
0
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0
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2.5k
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Comment: C: How to separate chip-seq peaks which are enriched for known TFs motifs from give
8.3 years ago by Fidel ★ 2.0k
2
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1
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2.5k
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Comment: C: Pysam: Determine intra-read-position of Base at Pileupsite
8.3 years ago by Fidel ★ 2.0k
0
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0
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3.6k
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Comment: C: Annotate each peak to gene starts within 10 kb of the peak with python ?
8.3 years ago by Fidel ★ 2.0k
0
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0
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4.4k
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Comment: C: IGV resizing tracks
8.4 years ago by Fidel ★ 2.0k
2
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0
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4.6k
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Comment: C: Open-source tools for GO enrichment in non-model organisms
8.4 years ago by Fidel ★ 2.0k
5
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3
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52k
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Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
8.4 years ago by Fidel ★ 2.0k
0
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0
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6.8k
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Comment: C: Chip-Seq Peak hight difference between BED and BW file formats.
8.5 years ago by Fidel ★ 2.0k
1
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0
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2.6k
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Comment: C: Separating gene list into chromatin domains and analysing separately within each
8.5 years ago by Fidel ★ 2.0k
4
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1
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52k
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Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
8.5 years ago by Fidel ★ 2.0k
0
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0
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2.7k
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Comment: C: ChIP-seq Genome Coverage
8.5 years ago by Fidel ★ 2.0k
1
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0
replies
2.2k
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Comment: C: Finding histone modification enrichment specific loci using modENCODE data
8.5 years ago by Fidel ★ 2.0k
1
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1
reply
2.6k
views
Comment: C: Separating gene list into chromatin domains
8.5 years ago by Fidel ★ 2.0k
0
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0
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3.3k
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Comment: C: How to describe this figure
8.5 years ago by Fidel ★ 2.0k
0
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0
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9.0k
views
Comment: Comment: Why does base quality of reads generally decreases at the end of the read?
updated 2.2 years ago by 44k • written 8.6 years ago by ★ 2.0k
0
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0
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8.1k
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Comment: Comment: Visualising the number of overlapping peaks in ChIP-seq studies
updated 2.1 years ago by 44k • written 8.6 years ago by ★ 2.0k
0
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1
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5.8k
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Comment: C: Merging many BAM files
8.6 years ago by Fidel ★ 2.0k
2
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1
reply
5.8k
views
Comment: C: Merging many BAM files
8.6 years ago by Fidel ★ 2.0k
3
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0
replies
9.0k
views
Comment: Comment: Pearson Correlation test between two Chip-Seq data sets
updated 2.1 years ago by 44k • written 8.6 years ago by ★ 2.0k
2
votes
1
reply
4.0k
views
Comment: Comment: Exon Center signal maps (metagene plots) using deepTools
updated 2.1 years ago by 44k • written 8.8 years ago by ★ 2.0k
1
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1
reply
3.9k
views
Comment: Comment: What is the best way to plot distribution of peak heights?
updated 2.1 years ago by 44k • written 8.9 years ago by ★ 2.0k
0
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1
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3.9k
views
Comment: Comment: What is the best way to plot distribution of peak heights?
updated 2.1 years ago by 44k • written 8.9 years ago by ★ 2.0k
0
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1
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9.0k
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Comment: C: how to merge overlapping intervals in a bedgraph file
8.9 years ago by Fidel ★ 2.0k
0
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0
replies
4.1k
views
Comment: C: P-value for enrichment of ChIP-Seq peaks within a genomic annotation
8.9 years ago by Fidel ★ 2.0k
0
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0
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2.4k
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Comment: C: getting base count (coverage) based on BAM file with strand information
8.9 years ago by Fidel ★ 2.0k
0
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0
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8.8k
views
Comment: Comment: How To Convert A Basic Bed File With Only 3 Columns (Chrname, Start, End Site) I
updated 2.0 years ago by 44k • written 8.9 years ago by ★ 2.0k
1
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0
replies
14k
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Comment: C: Chipseq Wig File With The Input Subtracted From Chip Sample
9.0 years ago by Fidel ★ 2.0k
0
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2
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14k
views
Comment: Comment: Chipseq Wig File With The Input Subtracted From Chip Sample
updated 24 months ago by 44k • written 9.0 years ago by ★ 2.0k
0
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0
replies
3.4k
views
Comment: Comment: Error while running computeMatrix of deepTools
updated 23 months ago by 44k • written 9.1 years ago by ★ 2.0k
0
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1
reply
6.5k
views
Comment: Comment: Making TSS plots for some genes for a particular histone mark
updated 23 months ago by 44k • written 9.1 years ago by ★ 2.0k
1
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0
replies
2.4k
views
Comment: C: Can Tophat2 Align a Book?
9.1 years ago by Fidel ★ 2.0k
0
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0
replies
2.8k
views
Comment: Comment: How to convert between gene ontology file formats
updated 22 months ago by 44k • written 9.1 years ago by ★ 2.0k
0
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0
replies
4.4k
views
Comment: Comment: Normalization of DNase-seq samples with globally different chromatin structures
updated 22 months ago by 44k • written 9.1 years ago by ★ 2.0k
87 results • Page 1 of 2
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