Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
2.5k
views
Comment: C: ChIP-seq Genome Coverage
7.5 years ago by Fidel ★ 2.0k
1
vote
0
replies
1.9k
views
Comment: C: Finding histone modification enrichment specific loci using modENCODE data
7.5 years ago by Fidel ★ 2.0k
1
vote
1
reply
2.2k
views
Comment: C: Separating gene list into chromatin domains
7.5 years ago by Fidel ★ 2.0k
0
votes
0
replies
3.0k
views
Comment: C: How to describe this figure
7.6 years ago by Fidel ★ 2.0k
0
votes
1
reply
4.4k
views
Answer: Answer: Python multiprocessing FASTQ file
updated 14 months ago by 40k • written 7.6 years ago by ★ 2.0k
0
votes
0
replies
7.9k
views
Comment: Comment: Why does base quality of reads generally decreases at the end of the read?
updated 14 months ago by 40k • written 7.6 years ago by ★ 2.0k
2
votes
1
reply
2.7k
views
Answer: Answer: Discovering motifs for core promoter elements on a set of enhancer sites
updated 14 months ago by 40k • written 7.6 years ago by ★ 2.0k
0
votes
0
replies
7.2k
views
Comment: Comment: Visualising the number of overlapping peaks in ChIP-seq studies
updated 14 months ago by 40k • written 7.6 years ago by ★ 2.0k
0
votes
1
reply
4.9k
views
Comment: C: Merging many BAM files
7.6 years ago by Fidel ★ 2.0k
2
votes
1
reply
4.9k
views
Comment: C: Merging many BAM files
7.6 years ago by Fidel ★ 2.0k
2
votes
0
replies
2.9k
views
Answer: Answer: Individual colors for heatmaps using ngsplot
updated 14 months ago by 40k • written 7.7 years ago by ★ 2.0k
0
votes
0
replies
2.2k
views
Answer: A: Comparison of two MeDip data sets
7.6 years ago by Fidel ★ 2.0k
3
votes
0
replies
8.3k
views
Comment: Comment: Pearson Correlation test between two Chip-Seq data sets
updated 14 months ago by 40k • written 7.7 years ago by ★ 2.0k
1
vote
0
replies
2.6k
views
Answer: A: Generating a strand specific heatmap of ChIP-Seq Data
7.7 years ago by Fidel ★ 2.0k
2
votes
1
reply
2.3k
views
Answer: Answer: Re-creating a published figure
updated 13 months ago by 40k • written 7.8 years ago by ★ 2.0k
2
votes
0
replies
7.5k
views
Answer: Answer: Deeptools sample scaling
updated 13 months ago by 40k • written 7.8 years ago by ★ 2.0k
2
votes
1
reply
3.6k
views
Comment: Comment: Exon Center signal maps (metagene plots) using deepTools
updated 13 months ago by 40k • written 7.8 years ago by ★ 2.0k
1
vote
1
reply
3.4k
views
Comment: Comment: What is the best way to plot distribution of peak heights?
updated 13 months ago by 40k • written 7.9 years ago by ★ 2.0k
0
votes
1
reply
3.4k
views
Comment: Comment: What is the best way to plot distribution of peak heights?
updated 13 months ago by 40k • written 7.9 years ago by ★ 2.0k
0
votes
1
reply
7.8k
views
Comment: C: how to merge overlapping intervals in a bedgraph file
7.9 years ago by Fidel ★ 2.0k
0
votes
0
replies
3.6k
views
Comment: C: P-value for enrichment of ChIP-Seq peaks within a genomic annotation
7.9 years ago by Fidel ★ 2.0k
1
vote
2
replies
4.5k
views
Answer: Answer: NGS plot error
updated 14 months ago by 40k • written 7.9 years ago by ★ 2.0k
0
votes
0
replies
2.2k
views
Comment: C: getting base count (coverage) based on BAM file with strand information
8.0 years ago by Fidel ★ 2.0k
0
votes
0
replies
8.1k
views
Comment: Comment: How To Convert A Basic Bed File With Only 3 Columns (Chrname, Start, End Site) I
updated 12 months ago by 40k • written 8.0 years ago by ★ 2.0k
2
votes
0
replies
8.1k
views
Answer: Answer: How To Convert A Basic Bed File With Only 3 Columns (Chrname, Start, End Site) I
updated 12 months ago by 40k • written 8.0 years ago by ★ 2.0k
1
vote
0
replies
13k
views
Comment: C: Chipseq Wig File With The Input Subtracted From Chip Sample
8.0 years ago by Fidel ★ 2.0k
2
votes
0
replies
2.7k
views
Answer: Answer: H3K4me3 occupancy visualisation
updated 12 months ago by 40k • written 8.0 years ago by ★ 2.0k
0
votes
2
replies
13k
views
Comment: Comment: Chipseq Wig File With The Input Subtracted From Chip Sample
updated 12 months ago by 40k • written 8.0 years ago by ★ 2.0k
0
votes
0
replies
3.2k
views
Comment: Comment: Error while running computeMatrix of deepTools
updated 11 months ago by 40k • written 8.1 years ago by ★ 2.0k
0
votes
1
reply
5.5k
views
Comment: Comment: Making TSS plots for some genes for a particular histone mark
updated 11 months ago by 40k • written 8.1 years ago by ★ 2.0k
2
votes
1
reply
5.5k
views
Answer: Answer: Making TSS plots for some genes for a particular histone mark
updated 11 months ago by 40k • written 8.1 years ago by ★ 2.0k
1
vote
0
replies
2.0k
views
Comment: C: Can Tophat2 Align a Book?
8.2 years ago by Fidel ★ 2.0k
0
votes
0
replies
2.5k
views
Comment: Comment: How to convert between gene ontology file formats
updated 11 months ago by 40k • written 8.2 years ago by ★ 2.0k
1
vote
2
replies
2.4k
views
Answer: Answer: analysis of deletion/insertion from mitochondria NGS data
updated 11 months ago by 40k • written 8.2 years ago by ★ 2.0k
4
votes
1
reply
2.5k
views
Answer: Answer: How to convert between gene ontology file formats
updated 11 months ago by 40k • written 8.2 years ago by ★ 2.0k
0
votes
0
replies
4.0k
views
Comment: Comment: Normalization of DNase-seq samples with globally different chromatin structures
updated 11 months ago by 40k • written 8.2 years ago by ★ 2.0k
0
votes
1
reply
4.0k
views
Answer: Answer: Normalization of DNase-seq samples with globally different chromatin structures
updated 11 months ago by 40k • written 8.2 years ago by ★ 2.0k
5
votes
0
replies
2.0k
views
Answer: Answer: Different qualities of genomes - Is there a standard/definition?
updated 11 months ago by 40k • written 8.2 years ago by ★ 2.0k
1
vote
1
reply
3.1k
views
Answer: Answer: How to test statistical significance of ChIPseq enrichment in custom BED regions
updated 11 months ago by 40k • written 8.2 years ago by ★ 2.0k
0
votes
0
replies
4.2k
views
Comment: Comment: The best definition to Enhancer and Promoter?
updated 11 months ago by 40k • written 8.2 years ago by ★ 2.0k
0
votes
1
reply
4.7k
views
Comment: C: How to extract peak coordinates for chip-seq bedgraph file ?
8.2 years ago by Fidel ★ 2.0k
2
votes
1
reply
4.7k
views
Comment: C: How to extract peak coordinates for chip-seq bedgraph file ?
8.2 years ago by Fidel ★ 2.0k
1
vote
1
reply
4.7k
views
Comment: C: How to extract peak coordinates for chip-seq bedgraph file ?
8.2 years ago by Fidel ★ 2.0k
1
vote
1
reply
1.6k
views
Answer: Answer: QC of ChIPseq data (controlling false negatives)
updated 10 months ago by 40k • written 8.2 years ago by ★ 2.0k
0
votes
0
replies
3.5k
views
Comment: Comment: Analysis Big Data from Hi-C--> a way to find significant interaction?
updated 9 months ago by 40k • written 8.2 years ago by ★ 2.0k
0
votes
0
replies
13k
views
Comment: Comment: Plotting Reads Around Tss
updated 9 months ago by 40k • written 8.3 years ago by ★ 2.0k
0
votes
1
reply
2.3k
views
Comment: C: Homer for NGS analysis
8.4 years ago by Fidel ★ 2.0k
1
vote
0
replies
2.5k
views
Answer: Answer: How to check whether two genomic regions contact in 3D?
updated 16 months ago by 40k • written 8.5 years ago by ★ 2.0k
0
votes
0
replies
1.9k
views
Comment: Comment: Assessing significance of protein binding data inside defined genomic intervals
updated 21 months ago by 40k • written 8.6 years ago by ★ 2.0k
0
votes
0
replies
1.9k
views
Comment: C: how to retreive and download sequence information
8.6 years ago by Fidel ★ 2.0k
159 results • Page 2 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6