User: mapleforest

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Posts by mapleforest

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Answer: A: Any experience with scaffolding using SSPACE tool
... In my opinion, SSPACE will not help your project in this case. You need 1kb, 2kb, 3kb ... 20kb mate-pair libraries. And I do not remember SSPACE can work on transcriptome assembly ...
written 3.4 years ago by mapleforest0
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Tool: The release of HaploMeger2: building reference and alterantive haploid assemblies for polymorphic diploid genomes
... Dear all, I would like to introduce you to the new HaploMerger2 package. Now it comes with a new and more advanced pipeline which can: 0. be easier to use; 1. reconstruct the allelic relationships within a diploid assembly; 2. detect and correct mis-joins in a diploid assembly; 3. reconstruct two h ...
assembly tool written 3.4 years ago by mapleforest0
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Answer: A: Removed contigs and genes from assembly by HaploMerger
... You can try HaploMerger2, the newly-upgraded package. ...
written 3.4 years ago by mapleforest0

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