User: C

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C20
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Posts by C

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Comment: C: Alternative Splicing Annotation of Exons and Introns
... I was able to successfully get the code and information required to build this database. Thank you. ...
written 3.6 years ago by C20
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Alternative Splicing Annotation of Exons and Introns
... Essentially I am trying to re-create a database with three classes of exons.  1) Constitutively Spliced Exons 2) Alternatively Retained Exons 3) Alternatively Skipped Exons This has been done before and I am attempting to re-create the database that this paper: http://www.sciencedirect.com/scien ...
annotation alternative splicing written 3.6 years ago by C20 • updated 4 months ago by Biostar ♦♦ 20
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Answer: A: Finding Overlapping Regions of Chip-Seq peaks, then visualising it.
... I'm not completely familiar with Homer's mergePeaks function, so take my advice with a grain of salt. Have you considered perhaps taking a look at the intersect function found in bedtools?  Also perhaps what you'd like to do is visualize the data in a type of bargraph? If I understand correctly you ...
written 3.6 years ago by C20

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