User: 12021560-040

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12021560-04060
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Posts by 12021560-040

<prev • 29 results • page 1 of 3 • next >
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Annotation of synonymous SNPs
... Is their any tool available that can be used for the annotation of Synonymous SNPs? ...
annotation snps synonymous written 3.7 years ago by 12021560-04060 • updated 3.7 years ago by Denise - Open Targets5.1k
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Comment: C: calculating frequency of snps
... Can you provide with me guideline that how can I use dbSNPs or EXAC Database? ...
written 3.7 years ago by 12021560-04060
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Obtaining Vcf from Snp list
... If we have rs ids of snps can they be used to obtain Vcf file. Is there any tool available to do so. If it is then please provide me with link of that and guideline that how to use it? ...
vcf snp list snp written 3.7 years ago by 12021560-04060 • updated 3.7 years ago by natasha.sernova3.7k
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calculating frequency of snps
... Is there any Tool that can be used to calculate frequency (MAF) by using rs ids of snps? ...
frequency snps written 3.7 years ago by 12021560-04060
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Frequency Threshold for WAnnovar
... I have annotated the vcf files of snps through WAnnovar. But I am confused that what could me minor allele frequency (MAF) or Risk allele frequency threshold that I can apply to sort out my results. For example If I want to sort out snps associated with Type 2 Diabetes in Asian population than what ...
maf annovar risk allele frequency written 3.7 years ago by 12021560-04060
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Normalization of microarray data?
... Please help me to pinpoint the error..? featureData: none experimentData: use'experimentData(object)' Annotation: pd.hugene.1.0.st.v1 > normData <- rma(rawData) Error in (function(classes,fdef,mtable) : unable to find an inherited method for function 'probeNames' fo ...
celfiles R software error rawdata written 3.8 years ago by 12021560-04060 • updated 3.3 years ago by russhh5.1k
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Comment: A: Error of Groups in R
... Please help me and pinpoint the error specifically If you can I am not getting any help from the above responses.. Please help me get out of this error i will be very thankful to you. gse50397dat = getGEO('GSE50397') gse50397raw= getGEOSuppFiles("GSE50397") tarfile <- grep("\\.tar ...
written 3.8 years ago by 12021560-04060
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Comment: C: Error of Groups in R
... please tell according to my script that which objects are not properly defined? ...
written 3.8 years ago by 12021560-04060
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Comment: C: Error of Groups in R
... > dim(gse50397eset) [1] 33297 89 > dim(design_gse50397) [1] 77 2 I run these commands but did not find anything useful.. :( ...
written 3.8 years ago by 12021560-04060
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Comment: C: Error of Groups in R
... > dim(gse50397eset) [1] 33297 89 > dim(design_gse50397) [1] 77 2 I run these commands but did not find anything useful.. :( ...
written 3.8 years ago by 12021560-04060

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