User: iamtuttu5

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iamtuttu540
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United States
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3 years, 3 months ago
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4 years ago
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Posts by iamtuttu5

<prev • 38 results • page 1 of 4 • next >
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Comment: C: HOW TO COMPARE TWO BLAST OUPUTS
... Thank you so much pierre :-) ...
written 3.3 years ago by iamtuttu540
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Comment: C: how to resolve , configure: error: Stopping here as BOOST thread lib must be ava
... Thank you so much novice ...
written 3.3 years ago by iamtuttu540
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Comment: A: HOW TO COMPARE TWO BLAST OUPUTS
... I got two results from Blast as two output file in outfmt6 format I want to find out At2g07698_2 in the second file if present and the details related to it like KOG ID and the function ...
written 3.3 years ago by iamtuttu540
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HOW TO COMPARE TWO BLAST OUPUTS
... I want to compare two blastx results , which is generated blastx.outfmt6 format , How to perform this task ? example for first file is assembly_c1 At2g07698_2 92.25 271 19 1 27 833 78 348 1.00E-178 508 assembly_c2 At1g07540 30.77 52 36 0 72 227 504 555 0.62 30.8 assembly_c3 AtCh073 80.43 46 9 ...
assembly next-gen blast rna-seq alignment written 3.3 years ago by iamtuttu540 • updated 2.8 years ago by Biostar ♦♦ 20
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Comment: C: how to resolve , configure: error: Stopping here as BOOST thread lib must be ava
... Dear novice so how to install the compiled binaries of mira ? ...
written 3.8 years ago by iamtuttu540
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how to resolve , configure: error: Stopping here as BOOST thread lib must be available at this stage. Sorry.
... Dear all   I was trying to install mira 4 in my ubuntu server but it result the following errorr while i run ./configure command checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p chec ...
assembly ngs rna-seq written 3.8 years ago by iamtuttu540 • updated 3.8 years ago by novice930
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Memory requirement for the transcriptome data analysis from ion PGM
... hello all   I am doing plant transcriptome data analysis . sequencing was done using ion PGM , i got 23 million single end reads and 24 million single end reads  for two biological replicates . i am planning to move with denovo transcriptome assembly can any one please help me by suggesting the m ...
ion pgm rna-seq denovo assembly written 3.9 years ago by iamtuttu540
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Comment: C: Differential expression analysis on Trinity tool
... dear biogeek89 Thank you so much for the prompt reply Now the command gives the following errorr   command used : ~/trinityrnaseq-2.0.6/Analysis/DifferentialExpression/analyze_diff_expr.pl --matrix /home/tuttu/card.counts.matrix.TMM_normalized.FPKM -C 2 -P 0.001 Result obtained :   ** Found ...
written 3.9 years ago by iamtuttu540
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Differential expression analysis on Trinity tool
... Hello all I am using trinity tool for analyzing RNAseq data from ion proton currently i am running  analyze_diff_expr.pl command , command used :  ~/trinityrnaseq-2.0.6/Analysis/DifferentialExpression/analyze_diff_expr.pl --matrix /home/tuttu/Trinity_cardop12.counts.matrix.TMM_normalized.FPKM -C ...
differential expression analysis rna-seq error written 3.9 years ago by iamtuttu540 • updated 3.9 years ago by Biogeek380
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How to make bowtie available via PATH settings ?
... Dear all, I 'm trying to run the script: align_and_estimate_abundance.pl with the comand: /usr/local/trinityrnaseq-2.0.6/util/align_and_estimate_abundance.pl --transcripts ./Step_2_Assembled/Trinity.fasta --est_method RSEM --aln_method bowtie --trinity_mode --prep_reference but is showing the fol ...
ubuntu bowtie rna-seq assembly written 3.9 years ago by iamtuttu540 • updated 3.9 years ago by biocyberman800

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