User: Ashley
Ashley • 10
- Reputation:
- 10
- Status:
- New User
- Location:
- China
- Last seen:
- 1 week, 4 days ago
- Joined:
- 2 years, 9 months ago
- Email:
- l***********@gmail.com
Posts by Ashley
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... All lncRNAs list I obtained from these four database and more (UCSC Genome Browser). But I really want to obtain other lncRNA set from other database, such as RefSeq. Because the number of all lncRNAs is lesser than others and it has more information than other, such as, linear or circular and so on ...
written 13 months ago by
Ashley • 10
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... However, I don't know how to download all lincRNAs from RefSeq in batch.
I can only search each lncRNA one by one via NCBI RefSeq database. ...
written 13 months ago by
Ashley • 10
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... And I'm more interested in lincRNA as a part of lncRNAs. ...
written 13 months ago by
Ashley • 10
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... I'm so sorry. I need a high quality set, RefSeq. Thanks a lot.
But I really need a lincRNAs list from RefSeq.
And good luck! ...
written 13 months ago by
Ashley • 10
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... Dear all,
In my project, I want to obtain the annotated long intergenic non-coding RNAs (lincRNAs) set. Among all kinds of representative annotation databases, I need a high quality set, RefSeq. However, I don't know how to download all lincRNAs from RefSeq in batch. Can you help me step by step ...
written 13 months ago by
Ashley • 10
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... It's maybe come from Jennifer lab.
H3K4me3 is the marker of promoter of lncRNA genes.
And H3K36me3 is the markers of gene body of lncRNA genes.
My boss wants me to find the first paper that associated with this.
However, I don't find this paper until now.
Thank you very much! I really appreciate you ...
written 14 months ago by
Ashley • 10
• updated
14 months ago by
Maria_Levchenko • 70
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Comment:
C: How to convert TPM to raw reads
... That's very helpful for me!
Thank you very very much! ...
written 14 months ago by
Ashley • 10
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Comment:
C: How to convert TPM to raw reads
... Thanks a lot!
Best,
Ashley ...
written 14 months ago by
Ashley • 10
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C: How to convert TPM to raw reads
... Thanks, got it.
Thank you very much! I'll follow your advice. ...
written 14 months ago by
Ashley • 10
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... How to convert TPM to raw reads
data:
tf_symbol 11327-117E4 11376-118A8
ADNP 32.9714806792 18.3495163063
ADNP2 3.21150785836 3.27021082687
AEBP1 148.799864104 123.359619525
AEBP2 12.8460314335 7.9938486879
AFF1 56.5225383072 45.7829515762
...
written 14 months ago by
Ashley • 10
• updated
14 months ago by
Devon Ryan ♦ 82k
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Popular Question
13 months ago,
created a question with more than 1,000 views.
For Gene set enrichment analysis (GSEA) of some lncRNAs(known for Gencode and newly assembled)
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