User: Ashley

gravatar for Ashley
Ashley60
Reputation:
60
Status:
Trusted
Location:
China
Twitter:
ashley199305
Last seen:
9 months, 3 weeks ago
Joined:
4 years, 6 months ago
Email:
l***********@gmail.com

Posts by Ashley

<prev • 68 results • page 1 of 7 • next >
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Answer: A: Some Questions About Python model -- pandas frame and function apply
... The answer is df.groupby([’xxxx’]).mean() ...
written 9 months ago by Ashley60 • updated 9 months ago by ATpoint34k
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(Closed) Some Questions About Python model -- pandas frame and function apply
... Hi all I have a question about data operation. I have a file: a 100 a 20 b 40 c 30 a 60 a 70 I want to obtain the result: a 60(the average of 100 and 20) b 40 c 30 d 65the average of 60 and 70) the pro ...
python rna-seq code sequencing written 9 months ago by Ashley60 • updated 9 months ago by ATpoint34k
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Comment: C: how to merge multi-chromosomes for sacCer3 -- a kind of yeast
... Thanks a lot for your help. ...
written 9 months ago by Ashley60
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Answer: A: Some Question About Converting sra format file to fastq format file
... The correct answer is "fastq-dump --table SEQUENCE SRR8523633". And I know the reason. ...
written 9 months ago by Ashley60
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how to merge multi-chromosomes for sacCer3 -- a kind of yeast
... I have fasta sequence of sacCer3 strain of yeast downloaded form http://hgdownload.cse.ucsc.edu/goldenPath/sacCer3/chromosomes/. Because I need to mapping mu sequence data to this specie, I have to merge them together. Could you tell me how to merge them ( chrI.fa, chrII.fa, chrIII.fa ...) ? May I ...
rna-seq sequencing written 9 months ago by Ashley60
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Some Question About Converting sra format file to fastq format file
... I have a nanopore sequencing data: https://www.ncbi.nlm.nih.gov/sra/SRX5326468[accn] And I want to convert sra format file to fastq format file. There is an error occured, and help would be greatly appreciate. Error information: **Rejected 1191866 SPOTS because SPOTLEN < 1. Read 1191866 spots fo ...
nanopore technology sequencing written 9 months ago by Ashley60
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Comment: C: How to calculate "Tissue specificity score" using JSD
... Thank you very much. ...
written 12 months ago by Ashley60
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Answer: A: How Can I Merge Intervals ?
... I know how to calculate this one. Just using groupby function and pd object. df.groupby(col2 and col3).apply(lambda x: np.average(col7, weights=col8)) ...
written 14 months ago by Ashley60
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Answer: A: How Can I Merge Intervals ?
... I think pandas and numpy models are suit for our analysis. ...
written 14 months ago by Ashley60
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How Can I Merge Intervals ?
... I want to merge intervals using weighted means instead of sum or average. Thanks for taking your time to read this file. My input data: data format: chrFileA startFileA endFile1 chrFile2 startFile2 endFile2 value TheLengthOfOverlap chr1 12000 13000 chr1 1298 ...
sequencing written 14 months ago by Ashley60

Latest awards to Ashley

Popular Question 16 months ago, created a question with more than 1,000 views. For How to calculate "Tissue specificity score" using JSD
Scholar 17 months ago, created an answer that has been accepted. For C: Questions About How to Plot NOMe-seq Plot
Popular Question 21 months ago, created a question with more than 1,000 views. For How to calculate "Tissue specificity score" using JSD

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