User: Ashley

gravatar for Ashley
Ashley10
Reputation:
10
Status:
New User
Location:
China
Last seen:
6 days, 5 hours ago
Joined:
3 years, 1 month ago
Email:
l***********@gmail.com

Posts by Ashley

<prev • 33 results • page 1 of 4 • next >
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Comment: C: Where should I go to download human SNP reference data ? hg18_unmasked.plusCont
... I'm also want to use hg19 or hg38. However, I have to reproduce the result from other published paper first. Fortunately, they used hg18 and maq (2008 version). There are some many bugs ...... ...
written 8 days ago by Ashley10
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MAQ install error
... Hello, I've been trying to install Maq onto a 64bit linux system. I've looked at the other threads that have had problems with Maq but nothing in those worked for me so I'm hoping someone might have some new answers! The `./configure` step works fine, but when I try to make, I get this output: ...
software error next-gen snp rna-seq written 8 days ago by Ashley10 • updated 8 days ago by h.mon21k
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Where should I go to download human SNP reference data ? hg18_unmasked.plusContam.fa
... Dear all, I want to call SNPs using Bis-SNP software, could you tell me where should I go? BTW, http://epigenome.usc.edu/publicationdata/bissnp2011/easyUsage.html and http://epigenome.usc.edu/publicationdata/bissnp2011/utilies.html are not available. Thanks for your help! ...
genome next-gen snp ucsc written 9 days ago by Ashley10 • updated 9 days ago by ATpoint11k
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Comment: C: Some Question About Hi-C data Analysis
... Thanks a lot! Give my best wishes! ...
written 7 weeks ago by Ashley10
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Comment: A: Some Question About Hi-C data Analysis
... I mapped the fastq files using bwa. I don't want to map them again. ...
written 7 weeks ago by Ashley10
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Comment: A: Some Question About Hi-C data Analysis
... My script is that juicer.sh -d /$path/merge -s "MboI" -S final -p /$path/hg19.chrom.sizes -y /$path/hg19_MboI.txt -z /$path/bwaindex/hg19.fa -D /$path/juicer -t 5 Error: no fastq/ folder ...
written 7 weeks ago by Ashley10 • updated 7 weeks ago by ATpoint11k
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Some Question About Hi-C data Analysis
... Recently, I am learning HiC data analysis using Juicer. I have two types of samples. And each of them has 3 replicate. How can I merge them? Just merge .bam files and filter duplicates from PCR? ...
next-gen juicer hic written 7 weeks ago by Ashley10
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Comment: C: How to download lincRNAs list (human) from RefSeq database ?
... All lncRNAs list I obtained from these four database and more (UCSC Genome Browser). But I really want to obtain other lncRNA set from other database, such as RefSeq. Because the number of all lncRNAs is lesser than others and it has more information than other, such as, linear or circular and so on ...
written 17 months ago by Ashley10
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Answer: A: How to download lincRNAs list (human) from RefSeq database ?
... However, I don't know how to download all lincRNAs from RefSeq in batch. I can only search each lncRNA one by one via NCBI RefSeq database. ...
written 17 months ago by Ashley10
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Comment: C: How to download lincRNAs list (human) from RefSeq database ?
... And I'm more interested in lincRNA as a part of lncRNAs. ...
written 17 months ago by Ashley10

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