User: Ashley
Ashley • 10
- Reputation:
- 10
- Status:
- New User
- Location:
- China
- Last seen:
- 6 days, 5 hours ago
- Joined:
- 3 years, 1 month ago
- Email:
- l***********@gmail.com
Posts by Ashley
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... I'm also want to use hg19 or hg38.
However, I have to reproduce the result from other published paper first.
Fortunately, they used hg18 and maq (2008 version).
There are some many bugs ...... ...
written 8 days ago by
Ashley • 10
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... Hello,
I've been trying to install Maq onto a 64bit linux system. I've looked at the other threads that have had problems with Maq but nothing in those worked for me so I'm hoping someone might have some new answers! The `./configure` step works fine, but when I try to make, I get this output:
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... Dear all,
I want to call SNPs using Bis-SNP software, could you tell me where should I go?
BTW, http://epigenome.usc.edu/publicationdata/bissnp2011/easyUsage.html and http://epigenome.usc.edu/publicationdata/bissnp2011/utilies.html are not available.
Thanks for your help! ...
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... Thanks a lot!
Give my best wishes!
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written 7 weeks ago by
Ashley • 10
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... I mapped the fastq files using bwa. I don't want to map them again. ...
written 7 weeks ago by
Ashley • 10
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... My script is that
juicer.sh -d /$path/merge -s "MboI" -S final -p /$path/hg19.chrom.sizes -y /$path/hg19_MboI.txt -z /$path/bwaindex/hg19.fa -D /$path/juicer -t 5
Error: no fastq/ folder
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... Recently, I am learning HiC data analysis using Juicer.
I have two types of samples. And each of them has 3 replicate.
How can I merge them? Just merge .bam files and filter duplicates from PCR? ...
written 7 weeks ago by
Ashley • 10
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... All lncRNAs list I obtained from these four database and more (UCSC Genome Browser). But I really want to obtain other lncRNA set from other database, such as RefSeq. Because the number of all lncRNAs is lesser than others and it has more information than other, such as, linear or circular and so on ...
written 17 months ago by
Ashley • 10
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... However, I don't know how to download all lincRNAs from RefSeq in batch.
I can only search each lncRNA one by one via NCBI RefSeq database. ...
written 17 months ago by
Ashley • 10
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... And I'm more interested in lincRNA as a part of lncRNAs. ...
written 17 months ago by
Ashley • 10
Latest awards to Ashley
Popular Question
4 months ago,
created a question with more than 1,000 views.
For How to calculate "Tissue specificity score" using JSD
Popular Question
17 months ago,
created a question with more than 1,000 views.
For Gene set enrichment analysis (GSEA) of some lncRNAs(known for Gencode and newly assembled)
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