User: J.Rodrigo Flores

Reputation:
50
Status:
New User
Location:
México
Last seen:
9 months, 3 weeks ago
Joined:
9 years ago
Email:
r****************@gmail.com

Student at the Center for Genomic Sciences UNAM, Mexico. My work/interest is focused on Human Genomics and Human Evolution.

Posts by J.Rodrigo Flores

<prev • 6 results • page 1 of 1 • next >
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Answer: A: About Accessible Genome Mask
... Hi, The coordinates present in both the pilot and strict mask bed files, they represent all those bases in the genome that according to the criteria of the 1K genomes project are fully 'callable' and therefore represented as 'P' bases ("passed all filters"; see links below). A simple test that va ...
written 3.1 years ago by J.Rodrigo Flores50
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Comment: C: Breakdancer And Bam2Cfg.Pl
... Hi, Then you have to install that module. You can find it (and plenty more of them) in the CPAN Repository. The one you're lookin for is this http://search.cpan.org/~lds/GD-2.46/GD.pm There are some alternative (and faster) ways to install a CPAN Module but if you haven't done it before I'd suggest ...
written 8.2 years ago by J.Rodrigo Flores50
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Answer: A: Clinical Covariates And Level 1 Data In The Cancer Genome Atlas (Tcga)
... Hi Ryan, Me and some collegues worked with TCGA data about a year ago. Specifically with glioblastoma samples. Certainly the amount of missing data depends on the cohort you want to work with. The experience in our case as far as I remember was that although for some samples there's missing clinica ...
written 8.3 years ago by J.Rodrigo Flores50
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Answer: A: Tools For Calculating Ld For Ngs Genomic Data And Generating Ld Decay Plot
... Hi There, Don't really have experience calculating LD neither ploting it but perhaps this link in R-bloggers can help you. The author poste some R code for estimating the decay of LD according to Hill and Weir, http://www.r-bloggers.com/estimate-decay-of-linkage-disequilibrium-with-distance/?utm_s ...
written 8.9 years ago by J.Rodrigo Flores50 • updated 9 months ago by RamRS27k
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Comment: C: Automated Plotting Of Seq. Reads In A Bam File
... Sorry, I'm not familiar at all with Phyton, just wondering how to read a file with say, 100 different positions at the genome and then input them into a loop to get the 100 different plots, ... Also, If you know any Perl option to do this would be nice to know it, Many thanks in advanc ...
written 9.0 years ago by J.Rodrigo Flores50
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Comment: C: Automated Plotting Of Seq. Reads In A Bam File
... Sorry, I'm not familiar at all with Phyton, just wondering how to read a file with say, 100 different positions at the genome and then input them into a loop to get the 100 different plots, ... If you know any Perl option to do this would be nice to know it, Many thanks in advance, ...
written 9.0 years ago by J.Rodrigo Flores50

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