User: hafiz.talhamalik

Reputation:
40
Status:
New User
Location:
Pakistan
Last seen:
10 hours ago
Joined:
3 years, 5 months ago
Email:
h***************@gmail.com

Posts by hafiz.talhamalik

<prev • 52 results • page 1 of 6 • next >
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vcf annotation for plant (soybean)
... I have a vcf file generated for plant data and I want to annotate that vcf file against my reference genome. How can i do that ?? any recommended software ? ...
vcf annotation gene genome written 23 days ago by hafiz.talhamalik40
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Comment: C: rRna gene finder (software) for bacterial whole genome sequence
... ok. I will try to that. if u get to know any other tool do let me know ...
written 11 weeks ago by hafiz.talhamalik40
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Comment: C: rRna gene finder (software) for bacterial whole genome sequence
... Yeah I am looking for annotation for my assembled genome. I used Prokka and as prokka uses rnammer so like RNAmmer, it didn't gave me any rRNA. Isn't the tRNAscan-SE prog is for tRNA search ??? ...
written 11 weeks ago by hafiz.talhamalik40
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rRna gene finder (software) for bacterial whole genome sequence
... I need to find rRna from my whole genome sequenced data of bacterial samples. I have tried RNAmmer & quast plugin for rRNA finding but both tools are not giving any rRNA. RNAmmer gives me an empty file. ...
genome rrna next-gen whole genome written 11 weeks ago by hafiz.talhamalik40 • updated 11 weeks ago by Carambakaracho960
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Comment: C: How to separate sequences of two species from Metagenomics Analysis?
... oh great.! I think these will serve the purpose. ...
written 12 weeks ago by hafiz.talhamalik40
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Comment: C: How to separate sequences of two species from Metagenomics Analysis?
... OK I will try that and will let you know. ...
written 12 weeks ago by hafiz.talhamalik40
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How to separate sequences of two species from Metagenomics Analysis?
... I have sequenced a genomics data. This contains ecoli and naegleria fowleri, and I want to separate both of them so I could assemble naegleria fowleri genome. Any Idea how to separate them from fastq files?? ...
genome assembly metagenomics wholegenome written 12 weeks ago by hafiz.talhamalik40
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Analysis of microarray replicate array in R?
... What does Replicate array means? and how can I perform differential gene expression in R for this type of data ? What will be the experimental design for that ? ...
expression-profiling R microarray written 4 months ago by hafiz.talhamalik40 • updated 3 months ago by Biostar ♦♦ 20
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Comment: C: Error in bcftools view -bvcg command
... oho. M really sorry for that..! ...
written 4 months ago by hafiz.talhamalik40
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Comment: C: Error in bcftools view -bvcg command
... oh okz.. Thanks for this. let me go through this. so in a nutshell you are suggesting samtool's aprroach is not good for this kind of analysis ? ...
written 4 months ago by hafiz.talhamalik40

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Popular Question 10 months ago, created a question with more than 1,000 views. For Threshold of removing genes with low counts ?
Popular Question 10 months ago, created a question with more than 1,000 views. For Which package to use for RPKM/FPKM RNA-seq counts?

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