User: hafiz.talhamalik

Reputation:
250
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Trusted
Location:
Pakistan
Twitter:
@hafizmuhdtalha
Last seen:
42 minutes ago
Joined:
5 years, 2 months ago
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Posts by hafiz.talhamalik

<prev • 134 results • page 1 of 14 • next >
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Comment: C: Plots coloring in BPGA pan genome analysis pipeline
... Yes. Just before exiting the program, there are files with .plt extension. you can edit those files and add colors..!! ...
written 41 minutes ago by hafiz.talhamalik250
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Comment: C: Extracting miRNA data from RNA-Seq data set
... no I didn't. as mentioned earlier RNA-seq library is of 150/200bp size so miRNA can't be captured by this as. ...
written 9 weeks ago by hafiz.talhamalik250
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Viral Genome Denovo Assembly
... any recommended tool or pipeline for assembling viral genome from long read NGS data ? ...
assembly written 12 weeks ago by hafiz.talhamalik250
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de novo annotation of eukaryotic amoeba
... I have mitochondrial genome of Naegleria. how can I perform annotation on this ? any tool available for denovo annotation for eukaryote ? ...
genome annotation written 3 months ago by hafiz.talhamalik250
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Comment: C: Extract Ribosomal DNA from Whole Genome Data
... Thanx. let me try that.. ...
written 4 months ago by hafiz.talhamalik250
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Extract Ribosomal DNA from Whole Genome Data
... How can I extract ribosomal DNA data from whole genome dna sequencing data ? any specific tool available for this purpose ? or if someone guide me how to do it ? ...
assembly written 4 months ago by hafiz.talhamalik250
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Comment: C: How to handle hexaploidy of Wheat for vcf file
... ok..!! May be I m wrong but Tassel is mainly designed for maize which is diploid. ...
written 5 months ago by hafiz.talhamalik250
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How to handle hexaploidy of Wheat for vcf file
... I have a GBS data for wheat. I mapped it to reference and then used freebayes for variant calling. it has the option for ploidy. so should I used 6 or 2 ? bcoz as wheat is hexploid but the reference has chromosomes sequences as 1A, 1B and 1C. so keeping in mind I should be using the parameter ploid ...
vcf next-gen gbs written 5 months ago by hafiz.talhamalik250 • updated 5 months ago by JC12k
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Answer: A: Snpcalling with replicates
... You should map individual sample and then make a combined vcf file. Its always good to make merged vcf file using from bam files rather than making individual vcf files and then merging it. ...
written 5 months ago by hafiz.talhamalik250
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Plots coloring in BPGA pan genome analysis pipeline
... I am using BPGA linux based tool for pan genome analysis. It runs quite fine and give me results. the only issue is coloring of plots. all plots made by the pipeline are of black/grey color. How can I made them interactive ? is there is any issue in library ? someone kindly guide me. ...
genome next-gen pan-genome written 5 months ago by hafiz.talhamalik250

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