User: hafiz.talhamalik

Reputation:
20
Status:
New User
Location:
Pakistan
Last seen:
3 days, 4 hours ago
Joined:
2 years, 10 months ago
Email:
h***************@gmail.com

Posts by hafiz.talhamalik

<prev • 21 results • page 1 of 3 • next >
0
votes
0
answers
68
views
0
answers
Understanding output of GARLIC: Genomic Autozygosity Regions Likelihood-based Inference and Classification tool
... I am trying to find ROH using GARLIC tool. Szpiech, Z. A., Blant, A., & Pemberton, T. J. (2017). GARLIC: genomic Autozygosity regions likelihood-based inference and classification. Bioinformatics, 33(13), 2059-2062. my output is shown below. i am not sure about result and also m not been able to ...
roh population genomics genomics written 10 days ago by hafiz.talhamalik20
0
votes
0
answers
118
views
0
answers
Where to get genetic map build 38 ?
... I need to run impute2 software.on human population data and for that i need genetic map of build 38. where can i get this ? I do have genetic map of build 37 but i need build 38 ...
genome next-gen written 3 months ago by hafiz.talhamalik20
0
votes
2
answers
261
views
2
answers
Comment: A: Explanation of SHAPEIT result
... Thanks alot. Now I got it. btw 5 means chromosome 5. ...
written 4 months ago by hafiz.talhamalik20
0
votes
2
answers
261
views
2
answers
Comment: C: Explanation of SHAPEIT result
... actually i am unable to understand this one. "For example a pair "1 0" means that the first haplotype carries the B allele while the second carries the A allele as specified in the LEGEND file" 1 means allele B and zero means Allele A ? ...
written 4 months ago by hafiz.talhamalik20
0
votes
2
answers
261
views
2
answers
Comment: C: Explanation of SHAPEIT result
... Yes it has the documentation. http://www.shapeit.fr/pages/m02_formats/haplegsample.html ...
written 4 months ago by hafiz.talhamalik20
0
votes
2
answers
261
views
2
answers
Comment: C: Explanation of SHAPEIT result
... explain means how to interpret this data. Format. What these 0,1 means ? corresponding to that ID ...
written 4 months ago by hafiz.talhamalik20
5
votes
2
answers
261
views
2
answers
Explanation of SHAPEIT result
... can anyone explain this .hap file for me ? I did phasing using SHAPEIT. 5 rs79182581 521049 G A 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 rs2672030 526078 A G 0 1 1 0 0 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 0 5 rs6880820 528609 T C 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 ...
genome phassing written 4 months ago by hafiz.talhamalik20
0
votes
1
answer
266
views
1
answers
Comment: C: SNPS finding for bacterial sequences
... I have used this.. but vcf file generated by SNP-sites has allignment issues. also why its not taking any reference file to generate vcf ? ...
written 7 months ago by hafiz.talhamalik20
0
votes
1
answer
266
views
1
answer
SNPS finding for bacterial sequences
... any software for snp calling for baterial data. I have about 300 bacterial sequences and i have done multiple sequence alignment. I want to find SNPs in them. kindly guide me about the pipeline and softwares as well. Regards ...
snp written 7 months ago by hafiz.talhamalik20 • updated 7 months ago by h.mon19k
0
votes
0
answers
613
views
0
answers
Forum: Quantum Computing in Genomics
... Is there any recent genome or transcriptome study using quantum computing ? or if some knows about use of quantum computing in genomics kindly guide me about this.. ...
genome forum next-gen rna-seq written 7 months ago by hafiz.talhamalik20 • updated 7 months ago by h.mon19k

Latest awards to hafiz.talhamalik

Popular Question 3 months ago, created a question with more than 1,000 views. For Threshold of removing genes with low counts ?
Popular Question 3 months ago, created a question with more than 1,000 views. For Which package to use for RPKM/FPKM RNA-seq counts?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 750 users visited in the last hour