User: hafiz.talhamalik

Reputation:
40
Status:
New User
Location:
Pakistan
Last seen:
3 days, 16 hours ago
Joined:
3 years, 2 months ago
Email:
h***************@gmail.com

Posts by hafiz.talhamalik

<prev • 45 results • page 1 of 5 • next >
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Analysis of microarray replicate array in R?
... What does Replicate array means? and how can I perform differential gene expression in R for this type of data ? What will be the experimental design for that ? ...
expression-profiling R microarray written 4 weeks ago by hafiz.talhamalik40 • updated 14 days ago by Biostar ♦♦ 20
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Comment: C: Error in bcftools view -bvcg command
... oho. M really sorry for that..! ...
written 7 weeks ago by hafiz.talhamalik40
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Comment: C: Error in bcftools view -bvcg command
... oh okz.. Thanks for this. let me go through this. so in a nutshell you are suggesting samtool's aprroach is not good for this kind of analysis ? ...
written 7 weeks ago by hafiz.talhamalik40
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Comment: C: Error in bcftools view -bvcg command
... yes assembled genomes. ...
written 7 weeks ago by hafiz.talhamalik40
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Comment: C: Error in bcftools view -bvcg command
... I have downloaded all the fasta sequence of salmonella from ncbi and now i want to compare snp's from those fasta files with my sequenced data's vcf file. ...
written 7 weeks ago by hafiz.talhamalik40
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Comment: C: Error in bcftools view -bvcg command
... samtools flagstat 4908 + 0 in total (QC-passed reads + QC-failed reads) 4 + 0 secondary 0 + 0 supplementary 0 + 0 duplicates 4761 + 0 mapped (97.00% : N/A) 0 + 0 paired in sequencing 0 + 0 read1 0 + 0 read2 0 + 0 properly paired (N/A : N/A) 0 + 0 with itse ...
written 7 weeks ago by hafiz.talhamalik40 • updated 7 weeks ago by finswimmer8.9k
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Comment: C: Error in bcftools view -bvcg command
... samtools --version samtools 1.8 Using htslib 1.8 --- bcftools --version bcftools 1.8 Using htslib 1.8 --- samtools view -H my-sorted.bam @HD VN:1.3 SO:coordinate @SQ SN:NC_003198.1 LN:4809037 @PG ID:bwa PN:bwa VN:0.7.12-r1039 CL:bwa mem -M ...
written 7 weeks ago by hafiz.talhamalik40 • updated 7 weeks ago by finswimmer8.9k
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Comment: C: Error in bcftools view -bvcg command
... yeah I tried that. sorted bam file is fine. ...
written 7 weeks ago by hafiz.talhamalik40
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Comment: C: Error in bcftools view -bvcg command
... completely blank one. no header, nothing ...
written 7 weeks ago by hafiz.talhamalik40
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Comment: C: Error in bcftools view -bvcg command
... yes i tried them separately but still empty file. ...
written 7 weeks ago by hafiz.talhamalik40

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Popular Question 7 months ago, created a question with more than 1,000 views. For Threshold of removing genes with low counts ?
Popular Question 7 months ago, created a question with more than 1,000 views. For Which package to use for RPKM/FPKM RNA-seq counts?

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