User: hafiz.talhamalik
hafiz.talhamalik • 20
- Reputation:
- 20
- Status:
- New User
- Location:
- Pakistan
- Last seen:
- 3 days, 4 hours ago
- Joined:
- 2 years, 10 months ago
- Email:
- h***************@gmail.com
Posts by hafiz.talhamalik
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... I am trying to find ROH using GARLIC tool. Szpiech, Z. A., Blant, A., & Pemberton, T. J. (2017). GARLIC: genomic Autozygosity regions likelihood-based inference and classification. Bioinformatics, 33(13), 2059-2062.
my output is shown below. i am not sure about result and also m not been able to ...
written 10 days ago by
hafiz.talhamalik • 20
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... I need to run impute2 software.on human population data and for that i need genetic map of build 38. where can i get this ? I do have genetic map of build 37 but i need build 38 ...
written 3 months ago by
hafiz.talhamalik • 20
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A: Explanation of SHAPEIT result
... Thanks alot. Now I got it.
btw 5 means chromosome 5. ...
written 4 months ago by
hafiz.talhamalik • 20
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C: Explanation of SHAPEIT result
... actually i am unable to understand this one.
"For example a pair "1 0" means that the first haplotype carries the B allele while the second carries the A allele as specified in the LEGEND file"
1 means allele B and zero means Allele A ?
...
written 4 months ago by
hafiz.talhamalik • 20
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C: Explanation of SHAPEIT result
... Yes it has the documentation.
http://www.shapeit.fr/pages/m02_formats/haplegsample.html ...
written 4 months ago by
hafiz.talhamalik • 20
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C: Explanation of SHAPEIT result
... explain means how to interpret this data. Format. What these 0,1 means ? corresponding to that ID ...
written 4 months ago by
hafiz.talhamalik • 20
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... can anyone explain this .hap file for me ? I did phasing using SHAPEIT.
5 rs79182581 521049 G A 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
5 rs2672030 526078 A G 0 1 1 0 0 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 0
5 rs6880820 528609 T C 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 ...
written 4 months ago by
hafiz.talhamalik • 20
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... I have used this.. but vcf file generated by SNP-sites has allignment issues.
also why its not taking any reference file to generate vcf ? ...
written 7 months ago by
hafiz.talhamalik • 20
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... any software for snp calling for baterial data. I have about 300 bacterial sequences and i have done multiple sequence alignment. I want to find SNPs in them. kindly guide me about the pipeline and softwares as well.
Regards ...
written 7 months ago by
hafiz.talhamalik • 20
• updated
7 months ago by
h.mon ♦ 19k
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... Is there any recent genome or transcriptome study using quantum computing ? or if some knows about use of quantum computing in genomics kindly guide me about this.. ...
written 7 months ago by
hafiz.talhamalik • 20
• updated
7 months ago by
h.mon ♦ 19k
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