User: hafiz.talhamalik

Reputation:
240
Status:
Trusted
Location:
Pakistan
Twitter:
@hafizmuhdtalha
Last seen:
4 days, 1 hour ago
Joined:
4 years, 10 months ago
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h***************@gmail.com

Posts by hafiz.talhamalik

<prev • 130 results • page 1 of 13 • next >
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Comment: C: Extract Ribosomal DNA from Whole Genome Data
... Thanx. let me try that.. ...
written 21 days ago by hafiz.talhamalik240
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Extract Ribosomal DNA from Whole Genome Data
... How can I extract ribosomal DNA data from whole genome dna sequencing data ? any specific tool available for this purpose ? or if someone guide me how to do it ? ...
assembly written 21 days ago by hafiz.talhamalik240
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Comment: C: How to handle hexaploidy of Wheat for vcf file
... ok..!! May be I m wrong but Tassel is mainly designed for maize which is diploid. ...
written 6 weeks ago by hafiz.talhamalik240
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How to handle hexaploidy of Wheat for vcf file
... I have a GBS data for wheat. I mapped it to reference and then used freebayes for variant calling. it has the option for ploidy. so should I used 6 or 2 ? bcoz as wheat is hexploid but the reference has chromosomes sequences as 1A, 1B and 1C. so keeping in mind I should be using the parameter ploid ...
vcf next-gen gbs written 6 weeks ago by hafiz.talhamalik240 • updated 6 weeks ago by JC11k
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Answer: A: Snpcalling with replicates
... You should map individual sample and then make a combined vcf file. Its always good to make merged vcf file using from bam files rather than making individual vcf files and then merging it. ...
written 7 weeks ago by hafiz.talhamalik240
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Plots coloring in BPGA pan genome analysis pipeline
... I am using BPGA linux based tool for pan genome analysis. It runs quite fine and give me results. the only issue is coloring of plots. all plots made by the pipeline are of black/grey color. How can I made them interactive ? is there is any issue in library ? someone kindly guide me. ...
genome next-gen pan-genome written 7 weeks ago by hafiz.talhamalik240
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COG analysis using whole genome data
... I want to perform COG analysis on my whole genome data. NCBI's database is there but I m not getting an idea how to use that. Is there any tool to perform this analysis?or if someone could help me how to use NCBI's COG database ? ...
genome written 8 weeks ago by hafiz.talhamalik240
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Comment: C: no single output file from maker
... yup that's the case with me.. I thought I will get a single output file. ...
written 8 weeks ago by hafiz.talhamalik240
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Comment: C: no single output file from maker
... It's completely finished. Log files shows some error in some contigs rest looks fine. ...
written 9 weeks ago by hafiz.talhamalik240
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no single output file from maker
... I ran MAKER tool for plant genome annotation. It last almost 2 weeks and there is no single final file as an output/result. there are hundred's of individual protein files but not a single gff file. why is it so ?? ...
annotation ngs plant genome written 9 weeks ago by hafiz.talhamalik240

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