User: hafiz.talhamalik

Reputation:
230
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Trusted
Location:
Pakistan
Twitter:
@hafizmuhdtalha
Last seen:
1 week, 2 days ago
Joined:
4 years, 6 months ago
Email:
h***************@gmail.com

Posts by hafiz.talhamalik

<prev • 115 results • page 1 of 12 • next >
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Comment: C: Maker tool annotation / taking for ever
... for blast I used 10cpus. ...
written 10 weeks ago by hafiz.talhamalik230
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Maker tool annotation / taking for ever
... I am using maker tool for annotation of a plant genome (non-model specie). I generated the de-novo assembly and now I doing it's annotation. It's been 3 days now and annotation is not completed yet. fasta file size was around 450MB. as per my thinking it shouldn't be taking that long. Anyone has the ...
annotation ngs plants genomics written 10 weeks ago by hafiz.talhamalik230
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Comment: C: de novo annotation of plants genome
... i came across few tools like maker-p but most of the genomes they used were already annotated. ...
written 12 weeks ago by hafiz.talhamalik230
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de novo annotation of plants genome
... any suggestion of tool for annotation of plant genome ? data I have is of plant for which no prior genome/annotation is available. I did the denovo assembly and now I want to perform annotation. suggestion would be appreciated ...
genome annotation plants written 12 weeks ago by hafiz.talhamalik230 • updated 12 weeks ago by colindaven2.2k
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Comment: C: Salmonella Typhimurium Strain Lineage
... try quantTB tool, its basically for TB strains but you can build your own database as well ...
written 12 weeks ago by hafiz.talhamalik230
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Comment: C: Usearch fatal error 'CharToIntQUal('M). phred score 44 out of range 0..42,base 3
... enable the tag -fastqmin 0 -fastqmax 47 while filtering. It will resolve the issue ...
written 12 weeks ago by hafiz.talhamalik230
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lineage analysis on microbial samples (tuberculosis)
... I want to perform lineage analysis on my microbial samples. I came across one platform TGS-TB which do this for tuberculosis, but it has the limitation of data uploading. I want to know is there any tool, package which help me perform this type of analysis for my samples ?? ...
genome genomics written 3 months ago by hafiz.talhamalik230
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Comment: C: Metagenomics data analysis
... you can also proceed without mapping file as well ...
written 4 months ago by hafiz.talhamalik230
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Comment: C: Metagenomics data analysis
... you can also proceed without mapping file as well ...
written 4 months ago by hafiz.talhamalik230
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Comment: C: EdgeR Warning message In estimateCommonDisp.
... what's in ur expt variable ?? how many replicates ?? ...
written 4 months ago by hafiz.talhamalik230

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Popular Question 10 weeks ago, created a question with more than 1,000 views. For Threshold of removing genes with low counts ?
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