User: hafiz.talhamalik

Reputation:
20
Status:
New User
Location:
Pakistan
Last seen:
2 weeks, 1 day ago
Joined:
2 years, 7 months ago
Email:
h***************@gmail.com

Posts by hafiz.talhamalik

<prev • 20 results • page 1 of 2 • next >
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Where to get genetic map build 38 ?
... I need to run impute2 software.on human population data and for that i need genetic map of build 38. where can i get this ? I do have genetic map of build 37 but i need build 38 ...
genome next-gen written 21 days ago by hafiz.talhamalik20
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Comment: A: Explanation of SHAPEIT result
... Thanks alot. Now I got it. btw 5 means chromosome 5. ...
written 7 weeks ago by hafiz.talhamalik20
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Comment: C: Explanation of SHAPEIT result
... actually i am unable to understand this one. "For example a pair "1 0" means that the first haplotype carries the B allele while the second carries the A allele as specified in the LEGEND file" 1 means allele B and zero means Allele A ? ...
written 7 weeks ago by hafiz.talhamalik20
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Comment: C: Explanation of SHAPEIT result
... Yes it has the documentation. http://www.shapeit.fr/pages/m02_formats/haplegsample.html ...
written 7 weeks ago by hafiz.talhamalik20
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Comment: C: Explanation of SHAPEIT result
... explain means how to interpret this data. Format. What these 0,1 means ? corresponding to that ID ...
written 7 weeks ago by hafiz.talhamalik20
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Explanation of SHAPEIT result
... can anyone explain this .hap file for me ? I did phasing using SHAPEIT. 5 rs79182581 521049 G A 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 rs2672030 526078 A G 0 1 1 0 0 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 0 5 rs6880820 528609 T C 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 ...
genome phassing written 7 weeks ago by hafiz.talhamalik20
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Comment: C: SNPS finding for bacterial sequences
... I have used this.. but vcf file generated by SNP-sites has allignment issues. also why its not taking any reference file to generate vcf ? ...
written 4 months ago by hafiz.talhamalik20
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SNPS finding for bacterial sequences
... any software for snp calling for baterial data. I have about 300 bacterial sequences and i have done multiple sequence alignment. I want to find SNPs in them. kindly guide me about the pipeline and softwares as well. Regards ...
snp written 4 months ago by hafiz.talhamalik20 • updated 4 months ago by h.mon15k
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Forum: Quantum Computing in Genomics
... Is there any recent genome or transcriptome study using quantum computing ? or if some knows about use of quantum computing in genomics kindly guide me about this.. ...
genome forum next-gen rna-seq written 4 months ago by hafiz.talhamalik20 • updated 4 months ago by h.mon15k
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Comment: C: Human Genome Assembly Computational Requirements
... Thanks for your kind help. ...
written 8 months ago by hafiz.talhamalik20

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