User: hafiz.talhamalik
hafiz.talhamalik • 250
- Reputation:
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- Pakistan
- Twitter:
- @hafizmuhdtalha
- Last seen:
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- Joined:
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Posts by hafiz.talhamalik
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... Yes.
Just before exiting the program, there are files with .plt extension. you can edit those files and add colors..!! ...
written 41 minutes ago by
hafiz.talhamalik • 250
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... no I didn't. as mentioned earlier RNA-seq library is of 150/200bp size so miRNA can't be captured by this as. ...
written 9 weeks ago by
hafiz.talhamalik • 250
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... any recommended tool or pipeline for assembling viral genome from long read NGS data ? ...
written 12 weeks ago by
hafiz.talhamalik • 250
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... I have mitochondrial genome of Naegleria. how can I perform annotation on this ? any tool available for denovo annotation for eukaryote ? ...
written 3 months ago by
hafiz.talhamalik • 250
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... Thanx. let me try that.. ...
written 4 months ago by
hafiz.talhamalik • 250
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... How can I extract ribosomal DNA data from whole genome dna sequencing data ? any specific tool available for this purpose ? or if someone guide me how to do it ? ...
written 4 months ago by
hafiz.talhamalik • 250
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... ok..!! May be I m wrong but Tassel is mainly designed for maize which is diploid. ...
written 5 months ago by
hafiz.talhamalik • 250
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... I have a GBS data for wheat. I mapped it to reference and then used freebayes for variant calling. it has the option for ploidy. so should I used 6 or 2 ? bcoz as wheat is hexploid but the reference has chromosomes sequences as 1A, 1B and 1C. so keeping in mind I should be using the parameter ploid ...
written 5 months ago by
hafiz.talhamalik • 250
• updated
5 months ago by
JC ♦ 12k
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Answer:
A: Snpcalling with replicates
... You should map individual sample and then make a combined vcf file.
Its always good to make merged vcf file using from bam files rather than making individual vcf files and then merging it. ...
written 5 months ago by
hafiz.talhamalik • 250
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... I am using BPGA linux based tool for pan genome analysis. It runs quite fine and give me results. the only issue is coloring of plots. all plots made by the pipeline are of black/grey color.
How can I made them interactive ? is there is any issue in library ?
someone kindly guide me.
...
written 5 months ago by
hafiz.talhamalik • 250
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