User: Xylanaser

gravatar for Xylanaser
Xylanaser50
Reputation:
50
Status:
New User
Location:
Poland - Warsaw - SGGW/WULS
Last seen:
2 months, 1 week ago
Joined:
4 years, 3 months ago
Email:
m***********@gmail.com

Posts by Xylanaser

<prev • 58 results • page 1 of 6 • next >
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Answer: A: Download pnly latest sequences from GenBank
... https://www.ncbi.nlm.nih.gov/books/NBK279680/ update_blastdb.pl check last paragraph ;) best wishes ...
written 10 weeks ago by Xylanaser50
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Comment: C: secondary structure comparison - how to approach this? / tools?
... Thank you, it solves my problem. Best wishes ...
written 10 weeks ago by Xylanaser50
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secondary structure comparison - how to approach this? / tools?
... I want to compare two secondary structures of aligned proteins. I do not know exactly how to do it well. Example: EEEEEEEEEEETTTTTTHCTTTEEECTTTEEECTTECTCCCHHHHHHHHHCHCCTHHEEEETTTEEECTTTEEECTTTEEC EEEHHHHHHHTTTTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEEEEEEEEEEE Exampl ...
python secondarystructure protein structure written 10 weeks ago by Xylanaser50 • updated 10 weeks ago by Mensur Dlakic3.6k
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Comment: C: HMP proteomic fasta size? HMP statistics?
... I saw that. It must be error. On HMP1v2 (2014) site project (https://hmpdacc.org/hmp/HMRGD/) archive with protein fasta weight 1,2gb (~2gb unziped). I remeber that HMP sequencing protein fasta translations too ( ͡° ʖ̯ ͡°) ...
written 12 weeks ago by Xylanaser50
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HMP proteomic fasta size? HMP statistics?
... Hey do you know where can i find HMP statistics? https://www.hmpdacc.org/catalog/statistics.php  those not work I know that HMP have sites and about 2000 reference genomes, but where can i find info about number of metagenomes ? I found this: https://www.ncbi.nlm.nih.gov/bioproject/28331 And ncbi f ...
fasta hmp protein written 12 weeks ago by Xylanaser50
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standalone CDsearch version?
... Hey is it somewhere a CDsearch standalone version? Or i need simulate it somehow with BLAST? Can u give me advice? cheers ...
cdsearch sequence cdd bioinformatics written 6 months ago by Xylanaser50 • updated 6 months ago by h.mon29k
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Comment: C: HHpred installation problem
... latest pdb70 is here http://wwwuser.gwdg.de/~compbiol/data/hhsuite/databases/hhsuite_dbs/ they update it (I do not have the latest one) , I can not find *.hmm file only pdb70_hhm.ffdata, pdb70_hhm.ffindex, pdb70_hhm_db, pdb70_hhm_db.index. I do not checked old releases: http://wwwuser.gwdg.de/~comp ...
written 7 months ago by Xylanaser50
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Comment: C: HHpred installation problem
... Hey. No :(. They did not answer me... If you learn something, I'm asking for help too. Cheers ...
written 7 months ago by Xylanaser50
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find bacteria lifestyle
... Hey. I have list of bacterias **example:** Gammaproteobacteria bacterium, Chloroflexi bacterium, marine metagenome, Anaerolineaceae bacterium, Erythrobacter sp., Sinorhizobium meliloti, Planctomycetes bacterium, Nonlabens ulvanivorans, Aequorivita sp., uncultured bacterium, Planctomycetaceae bacte ...
lifestyle bacteria taxonomy written 9 months ago by Xylanaser50
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Comment: C: Biopython coding, sublist from list dependently by id
... thanks ;) works fine! ...
written 9 months ago by Xylanaser50

Latest awards to Xylanaser

Scholar 10 weeks ago, created an answer that has been accepted. For A: IHMP downloads - how?
Popular Question 5 months ago, created a question with more than 1,000 views. For blaSTorage intallation problem
Popular Question 12 months ago, created a question with more than 1,000 views. For Blast+ db problem
Popular Question 15 months ago, created a question with more than 1,000 views. For Blast+ db problem
Supporter 19 months ago, voted at least 25 times.
Popular Question 20 months ago, created a question with more than 1,000 views. For Blast+ db problem
Scholar 2.3 years ago, created an answer that has been accepted. For A: IHMP downloads - how?

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