User: biology1234

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Posts by biology1234

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Gene Ontology R Package Query Directly from the Gene Ontology Consortium
... I have a set of ENSEMBL IDs and I want to label them with their molecular components programmatically using R. There are many R packages to do this, however I am looking for an R package which will load the data directly from the Gene Ontology consortium and give up to date information (rather than ...
gene ontology written 4 months ago by biology12340 • updated 4 months ago by EagleEye4.8k
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Downsample bgen file
... I have some rather large BGEN files and was wondering if there is a tool I can use to perform a random downsample of the SNPs in the files? ...
bgen snp written 10 months ago by biology12340
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Ped file contains: 0, -, multibase SNPs, and reverse order genotypes
... I converted a BED file to PED using PLINK. However when I look through some of my SNPs I notice that some alleles have "-" and "0" as the called base. I understand "0" is a miscall but what is "-" (searched docs, can't find information). Sometimes the order of the genotype changes e.g some SNPs co ...
snp written 11 months ago by biology12340
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Comparison of two similar e coli genomes
... What is the best way to perform a nucleotide by nucleotide comparison of two very similar / almost identical genomes? ...
genome written 21 months ago by biology12340 • updated 21 months ago by 5heikki6.9k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
... Please correct me if I am wrong, but none of these answers seem to work with nanopore data. ...
written 2.0 years ago by biology12340

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