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0
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0
replies
129
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How to generate a comparative map using CGview?
genome
map
CGView
11 days ago by
marongiu.luigi
▴ 710
2
votes
6
replies
481
views
How to visualize multiple bacterial genomes with circos?
atlas
genome
visualization
updated 9 weeks ago by
mathavanbioinfo
▴ 80 • written 9 weeks ago by
marongiu.luigi
▴ 710
0
votes
1
reply
481
views
Comment:
Comment: How to visualize multiple bacterial genomes with circos?
9 weeks ago by
marongiu.luigi
▴ 710
3
votes
2
replies
264
views
Alternatives to Mummer3 for linux?
alignmemt
sequences
aligner
updated 9 weeks ago by
Dave Carlson
★ 1.7k • written 9 weeks ago by
marongiu.luigi
▴ 710
0
votes
1
reply
225
views
How to annotate phage genomes?
genome
phage
annotation
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
marongiu.luigi
▴ 710
0
votes
0
replies
366
views
Comment:
Comment: How to run BRIG on Ubuntu 22?
10 weeks ago by
marongiu.luigi
▴ 710
3
votes
2
replies
366
views
How to run BRIG on Ubuntu 22?
BRIG
Ubuntu
10 weeks ago by
marongiu.luigi
▴ 710
0
votes
0
replies
248
views
Comment:
Comment: How to add flags to callvariants.sh?
10 weeks ago by
marongiu.luigi
▴ 710
0
votes
0
replies
454
views
Comment:
Comment: How to draw genome atlas on Linux?
10 weeks ago by
marongiu.luigi
▴ 710
0
votes
0
replies
454
views
Comment:
Comment: How to draw genome atlas on Linux?
10 weeks ago by
marongiu.luigi
▴ 710
1
vote
7
replies
454
views
How to draw genome atlas on Linux?
atlas
genome
visualization
10 weeks ago by
marongiu.luigi
▴ 710
1
vote
2
replies
248
views
How to add flags to callvariants.sh?
callvariants.sh
bbtools
10 weeks ago by
marongiu.luigi
▴ 710
0
votes
2
replies
378
views
How to launch MAUVE on Ubuntu 22?
mauve
ubuntu
aligner
updated 11 weeks ago by
brian.fristensky
▴ 460 • written 11 weeks ago by
marongiu.luigi
▴ 710
0
votes
0
replies
165
views
How to make block alignment graph with PROGRESSIVE-MAUVE?
mauve
ubuntu
aligner
11 weeks ago by
marongiu.luigi
▴ 710
0
votes
1
reply
928
views
Comment:
Comment: Aligner with statistics included?
11 weeks ago by
marongiu.luigi
▴ 710
0
votes
1
reply
1.3k
views
Comment:
Comment: What is the correct procedure to generate a consensus bacterial sequence?
11 weeks ago by
marongiu.luigi
▴ 710
0
votes
2
replies
928
views
Comment:
Comment: Aligner with statistics included?
5 months ago by
marongiu.luigi
▴ 710
0
votes
0
replies
928
views
Comment:
Comment: Aligner with statistics included?
5 months ago by
marongiu.luigi
▴ 710
0
votes
0
replies
928
views
Comment:
Comment: Aligner with statistics included?
5 months ago by
marongiu.luigi
▴ 710
5
votes
12
replies
1.3k
views
What is the correct procedure to generate a consensus bacterial sequence?
consensus
samtools
illumina
fastq
updated 10 weeks ago by
Brian Bushnell
20k • written 6 months ago by
marongiu.luigi
▴ 710
2
votes
9
replies
928
views
Aligner with statistics included?
aligner
alignment
updated 10 weeks ago by
Brian Bushnell
20k • written 5 months ago by
marongiu.luigi
▴ 710
1
vote
2
replies
539
views
How to properly run prokka on Ubuntu 22?
ubuntu
prokka
updated 5 months ago by
Ram
43k • written 5 months ago by
marongiu.luigi
▴ 710
0
votes
1
reply
1.3k
views
Comment:
Comment: What is the correct procedure to generate a consensus bacterial sequence?
5 months ago by
marongiu.luigi
▴ 710
1
vote
1
reply
322
views
Clustal omega does not align: Killedssive alignment output
sequence-alignment
clustal
updated 5 months ago by
Ram
43k • written 5 months ago by
marongiu.luigi
▴ 710
0
votes
2
replies
1.3k
views
Comment:
Comment: What is the correct procedure to generate a consensus bacterial sequence?
5 months ago by
marongiu.luigi
▴ 710
0
votes
1
reply
1.3k
views
Comment:
Comment: What is the correct procedure to generate a consensus bacterial sequence?
6 months ago by
marongiu.luigi
▴ 710
0
votes
1
reply
369
views
How to generate a consensus sequence from BAM file with bcftools?
bam
bcftools
consensus
updated 6 months ago by
GenoMax
140k • written 6 months ago by
marongiu.luigi
▴ 710
0
votes
0
replies
258
views
How to assemble bacterial genomes accounting for plasmids?
genome
assembly
bacteria
6 months ago by
marongiu.luigi
▴ 710
0
votes
0
replies
1.3k
views
Comment:
Comment: How reliable are WGS results?
19 months ago by
marongiu.luigi
▴ 710
6
votes
10
replies
1.3k
views
How reliable are WGS results?
WGS
accuracy
quality
reliability
control
19 months ago by
marongiu.luigi
▴ 710
2
votes
9
replies
2.3k
views
Reality check for consensus fasta generated with bcftools
reference-genome
bcftools
assembly
fasta
updated 2.3 years ago by
Ram
43k • written 2.3 years ago by
marongiu.luigi
▴ 710
0
votes
2
replies
2.3k
views
Comment:
Comment: Reality check for consensus fasta generated with bcftools
2.3 years ago by
marongiu.luigi
▴ 710
0
votes
0
replies
792
views
How to use PhageTerm?
genome
assembly
PhageTerm
phage
2.3 years ago by
marongiu.luigi
▴ 710
0
votes
1
reply
1.2k
views
Comment:
Comment: What is the procedure for the assembly of bacteriophage genomes?
2.3 years ago by
marongiu.luigi
▴ 710
0
votes
1
reply
2.3k
views
Comment:
Comment: Reality check for consensus fasta generated with bcftools
2.3 years ago by
marongiu.luigi
▴ 710
0
votes
0
replies
1.5k
views
Comment:
Comment: How to collapse de novo contigs into a single sequence?
2.3 years ago by
marongiu.luigi
▴ 710
0
votes
1
reply
1.5k
views
Comment:
Comment: How to collapse de novo contigs into a single sequence?
2.3 years ago by
marongiu.luigi
▴ 710
0
votes
1
reply
1.5k
views
Comment:
Comment: How to collapse de novo contigs into a single sequence?
2.3 years ago by
marongiu.luigi
▴ 710
3
votes
6
replies
1.5k
views
How to collapse de novo contigs into a single sequence?
genome
de
contigs
assembly
spades
bruijn
2.3 years ago by
marongiu.luigi
▴ 710
0
votes
1
reply
1.2k
views
Comment:
Comment: What is the procedure for the assembly of bacteriophage genomes?
2.3 years ago by
marongiu.luigi
▴ 710
0
votes
1
reply
1.2k
views
Comment:
Comment: What is the procedure for the assembly of bacteriophage genomes?
2.3 years ago by
marongiu.luigi
▴ 710
3
votes
6
replies
1.2k
views
What is the procedure for the assembly of bacteriophage genomes?
genome
methods
phage
assembly
WGS
updated 2.3 years ago by
shenwei356
8.4k • written 2.3 years ago by
marongiu.luigi
▴ 710
2
votes
2
replies
914
views
Where to store large files?
storage
updated 2.5 years ago by
EagleEye
7.5k • written 2.5 years ago by
marongiu.luigi
▴ 710
1
vote
5
replies
2.0k
views
switch off warning in blast command line
efetch
ensembl
warnings
updated 2.9 years ago by
Mensur Dlakic
★ 26k • written 2.9 years ago by
marongiu.luigi
▴ 710
0
votes
1
reply
990
views
Comment:
Comment: What is the resolution of microbial sequence assembly
2.9 years ago by
marongiu.luigi
▴ 710
2
votes
4
replies
990
views
What is the resolution of microbial sequence assembly
microbiome
SPAdes
assembly
species
updated 2.9 years ago by
juanjo75es
▴ 130 • written 2.9 years ago by
marongiu.luigi
▴ 710
0
votes
1
reply
2.0k
views
Comment:
Comment: switch off warning in blast command line
2.9 years ago by
marongiu.luigi
▴ 710
0
votes
1
reply
685
views
Export ensembl efetch in comma-delimited format
format
efetch
ensembl
updated 2.9 years ago by
GenoMax
140k • written 2.9 years ago by
marongiu.luigi
▴ 710
0
votes
1
reply
720
views
How to solve Warning: [blastx] Taxonomy name
alignment
blastx
warning
blast
updated 2.9 years ago by
GenoMax
140k • written 2.9 years ago by
marongiu.luigi
▴ 710
0
votes
0
replies
1.7k
views
Comment:
Comment: How to calculate bam coverage apart from Qualimap?
2.9 years ago by
marongiu.luigi
▴ 710
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