User: cjgunase

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cjgunase30
Reputation:
30
Status:
New User
Location:
United States
Last seen:
7 months, 3 weeks ago
Joined:
4 years, 1 month ago
Email:
c*******@mtu.edu

Posts by cjgunase

<prev • 19 results • page 2 of 2 • next >
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Analysing RNA-seq data and whole genome bisulfite seq data on same tissues (multi-read out sequencing data)
... Hello, We recently sequenced RNA-seq data and Whole genome bisulfite seq data on same mouse neuronal tissues (5 DNMT3a knockout and 5 WT). I am interested in other similar publications which analyzed sequencing data (both RNA-seq and WGBS) on same tissues. If anyone knows recent publications in thi ...
bisufite-seq next-gen rna-seq sequencing written 2.3 years ago by cjgunase30 • updated 21 months ago by davichen10
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Comment: C: How to quantify the overlapping reads in paired-end DNA sequencing to check the
... so based on the diagram above should consider insert length(which is from BAM file) NOT the fragment length? ...
written 2.3 years ago by cjgunase30
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Comment: C: How to quantify the overlapping reads in paired-end DNA sequencing to check the
... So if **Insert Length (N)** and read 1( r1) and read 2( r2). (r1+r2 - N) should give the length overlapping bases. (+) lengths for overlap. so we can plot a histogram of the frequency of overlapped base lengths. For high quality, this should be a right-skewed distribution. ...
written 2.3 years ago by cjgunase30
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Comment: C: How to quantify the overlapping reads in paired-end DNA sequencing to check the
... sorry, I am confused. You said the to compare the fragment length with insert size. then how to check it is less than sum of two reads. I am new to this so sorry if this is very simple thing that i am missing. ...
written 2.3 years ago by cjgunase30
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How to quantify the overlapping reads in paired-end DNA sequencing to check the sequencing efficiency
... Hi All, I am a newbie to sequencing technologies. Is there a way to quantify the paired-end sequencing overlap. since completely overlapping the read pairs would be a waste of sequencing resources. A bit of overlap can be useful when doing the alignment but a small gap is optimal to maximize cover ...
sequencing written 2.3 years ago by cjgunase30 • updated 2.3 years ago by h.mon29k
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Is microarray gene expression analysis is dead ?
... Is analyzing microarray data is considered obsolete? are there recent publications using gene expression data to construct large gene regulatory networks ? ...
gene expression microarray written 3.3 years ago by cjgunase30 • updated 3.3 years ago by genomicswolf20
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Display Fastaq data on JBrowse
... Hi, I am new to bioinformatics. and I am trying to display FASTAQ data in JBrowse. What steps do I need to follow to convert and display these data in Jbrowse ? Thank you ...
fastaq jbrowse written 3.8 years ago by cjgunase30 • updated 3.1 years ago by cmdcolin1.3k
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Variable selection for multiple regression from large number of predictors
... These are micro array datasets. I have 20 response variables Y=(Y1,…,Y20), and 1600 predictor variables X=(X1,…,Y1600). There are 128 observations. I wanted to know which pairs of X can best predict each of Y.  So I generated all the combinations of (Yi,Xj,Xk) and did linear regressions for each co ...
gene chip-seq written 4.1 years ago by cjgunase30 • updated 3.4 years ago by Biostar ♦♦ 20
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what are good publications in gene regulatory network domain which need implementation ?
... Hello ! I am looking for good publications in gene regulatory networks domain for implementation. It can be sound statistical method for data analysis , or computational method for network inference etc. I want to develop software based on these finding and put on the web for free for any one to us ...
software network gene regulation written 4.1 years ago by cjgunase30 • updated 4.0 years ago by Biostar ♦♦ 20

Latest awards to cjgunase

Popular Question 10 months ago, created a question with more than 1,000 views. For Variable selection for multiple regression from large number of predictors
Popular Question 18 months ago, created a question with more than 1,000 views. For Is microarray gene expression analysis is dead ?
Popular Question 20 months ago, created a question with more than 1,000 views. For Is microarray gene expression analysis is dead ?

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