User: geizetomazetto

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Posts by geizetomazetto

<prev • 7 results • page 1 of 1 • next >
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Comment: C: How to retrieve/extract specific intergenic regions?
... Hi .. I appreciate your hits. However, only for E. coli there are 8,000 sequences. To download gff and extract them, I do not know if it would not be much easy. ...
written 28 days ago by geizetomazetto0
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How to retrieve/extract specific intergenic regions?
... Hi Folks, A database was constructed for a target protein sequences, including protein_ID, start codon, stop codon, BioSample, and Assembly Accession. It means, the data has a lot of “XX” protein sequences from different bacterial genomes. Now, I would like to use this information to retrieve/e ...
perl python extract intergenic region written 28 days ago by geizetomazetto0
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Comment: C: CD-HIT Clustering output
... Hi there, This script does not work very well - wrong count. Particulary for large output.. ...
written 4 weeks ago by geizetomazetto0
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Extracting assembly accession number and protein ID using e-utilities
... Hi Folks, I am trying to use my list of protein IDs (e.,g VUX63899.1,QDO61010.1, QDO50771.1) to retrieve the assembly accession number. Using the follow commands .. epost -input teste.txt -db protein | elink -target nuccore -db protein | elink -target assembly |esummary | xtract -pattern As ...
genome assembly e-utilities sequence written 6 weeks ago by geizetomazetto0
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Comment: C: How to remove a substring from each line with python 3
... For me, it does not work. ...
written 5 months ago by geizetomazetto0
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Comment: C: How to remove a substring from each line with python 3
... Hi JC, Thanks a lot. Save my day. ...
written 5 months ago by geizetomazetto0
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How to remove a substring from each line using python 3
... Hi Folks, So, I have this header lines... >CP001830.1_cds_AEH77465.1_1 [locus_tag=SM11_chr0180] [protein_id=AEH77465.1] [location=195246..195674] >KI271598.1_cds_ERL64443.1_1 [locus_tag=L248_0985] [protein_id=ERL64443.1] [location=complement(53545..53919)] >CR931997.1_cds_ ...
sequencing written 5 months ago by geizetomazetto0 • updated 6 weeks ago by Wayne330

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