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2
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miRDeep2: mapping produced bowtie.log and mapper.log - which one to trust?
miRDeep2 miRNA-Seq small RNA-Seq RNA-Seq
updated 23 months ago by • 0 • written 7.3 years ago by ★ 2.4k
298
votes
27
replies
45k
views
33 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq sequencing papers
updated 21 months ago by 43k • written 8.2 years ago by ★ 2.4k
0
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0
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5.3k
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Comment: C: cellranger mkref failed
4.0 years ago by CandiceChuDVM ★ 2.4k
0
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1
reply
5.3k
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Comment: C: cellranger mkref failed
4.0 years ago by CandiceChuDVM ★ 2.4k
0
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0
replies
45k
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Comment: C: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 4.3 years ago by 43k • written 8.2 years ago by ★ 2.4k
10
votes
9
replies
3.8k
views
Small RNA-seq experimental design, pooling samples or not ? which one is better?
RNA-Seq mirna-seq microrna small RNA-SEQ pooling
updated 5.9 years ago by ▴ 10 • written 7.0 years ago by ★ 2.4k
12
votes
11
replies
7.5k
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Tutorial: How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
NCBI Bioproject SRA BioSample
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.4k
16
votes
10
replies
4.6k
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How to perform edgeR based on serial paired samples? (model.matrix design)
edgeR r RNA-Seq
6.8 years ago by CandiceChuDVM ★ 2.4k
1
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2
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4.6k
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Comment: C: How to perform edgeR based on serial paired samples?
6.8 years ago by CandiceChuDVM ★ 2.4k
0
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0
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3.8k
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Answer: A: Small RNA-seq experimental design, pooling samples or not ? which one is better?
7.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
0
replies
3.8k
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Comment: C: Small RNA-seq experimental design, which one is better?
7.0 years ago by CandiceChuDVM ★ 2.4k
0
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1
reply
7.5k
views
Comment: C: How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
7.1 years ago by CandiceChuDVM ★ 2.4k
0
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0
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7.5k
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Comment: C: How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
7.1 years ago by CandiceChuDVM ★ 2.4k
0
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0
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7.5k
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Comment: C: How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
7.1 years ago by CandiceChuDVM ★ 2.4k
1
vote
0
replies
3.8k
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NCBI SRA submission: neither sample_name nor biosample_accession are set
SRA Sequence Read Archive ncbi RNA-Seq
7.1 years ago by CandiceChuDVM ★ 2.4k
1
vote
0
replies
45k
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Comment: C: Up-to-date RNA-Seq Analysis Training/Courses/Papers (July 2016)
7.7 years ago by CandiceChuDVM ★ 2.4k
1
vote
3
replies
2.7k
views
How to interpret RseQC result for -r/--mate-inner-dist in Tophat2?
Tophat2 bowtie2 RseQC RNA-Seq
updated 7.9 years ago by 20 • written 8.1 years ago by ★ 2.4k
0
votes
5
replies
2.0k
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Possible downsides for direct gene list analysis in Gene Ontology?
RNA-Seq gene ontology goseq R panther
updated 7.9 years ago by 20 • written 8.0 years ago by ★ 2.4k
0
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1
reply
4.1k
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Comment: C: How to do gene length bias corrected KEGG pathway analysis for non-native specie
7.9 years ago by CandiceChuDVM ★ 2.4k
1
vote
3
replies
4.1k
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How to do gene length bias corrected KEGG pathway analysis for non-native species in goseq?
goseq biomaRt R RNA-Seq gene ontology
updated 7.9 years ago by ▴ 90 • written 8.0 years ago by ★ 2.4k
0
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1
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2.0k
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Comment: C: Possible downsides for direct gene list analysis in Gene Ontology?
8.0 years ago by CandiceChuDVM ★ 2.4k
0
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0
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2.0k
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Comment: C: Possible downsides for direct gene list analysis in Gene Ontology?
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
0
replies
3.2k
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Comment: C: Inconsistency in Panther vs KOBAS2.0. Other recommendation for KEGG?
8.0 years ago by CandiceChuDVM ★ 2.4k
6
votes
13
replies
3.2k
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Inconsistency in Panther vs KOBAS2.0. Other recommendation for KEGG?
RNA-Seq GENE ONTOLOGY GO KEGG
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
3.2k
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Comment: C: Inconsistency in Panther vs KOBAS2.0. Other recommendation for KEGG?
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
3.2k
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Answer: A: Gene Ontology: Panther or KEGG?
8.0 years ago by CandiceChuDVM ★ 2.4k
0
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0
replies
3.2k
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Answer: A: Gene Ontology: Panther or KEGG?
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
5.3k
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Comment: C: DESeq2 time course experiments: how to make plots for selected genes?
8.0 years ago by CandiceChuDVM ★ 2.4k
4
votes
3
replies
5.3k
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DESeq2 time course experiments: how to make plots for specific genes?
RNA-Seq deseq2 r
8.0 years ago by CandiceChuDVM ★ 2.4k
5
votes
12
replies
3.6k
views
Low DE genes in DESeq2 (update PCA plots)
RNA-Seq HTseq HISAT2 DEseq2 Samtools
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
3.6k
views
Comment: C: Low DE genes in DESeq2
8.0 years ago by CandiceChuDVM ★ 2.4k
0
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1
reply
3.6k
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Comment: C: Low DE genes in DESeq2
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
3.6k
views
Comment: C: Low DE genes in DESeq2
8.0 years ago by CandiceChuDVM ★ 2.4k
0
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0
replies
3.6k
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Comment: C: Low DE genes in DESeq2
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
3.6k
views
Comment: C: Low DE genes in DESeq2
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
0
replies
2.3k
views
Can't group samples in StringTie for differential expression
RNA-Seq StringTie differential expression
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
0
replies
19k
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Comment: C: HISAT2 command help
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
19k
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Comment: C: HISAT2 command help
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
0
replies
2.4k
views
Answer: A: Cuffdiff output ID list for gene ontology analysis in Panther
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
2.4k
views
Cuffdiff output ID list for gene ontology analysis in Panther
RNA-Seq Panther Gene Ontology cuffdiff
8.0 years ago by CandiceChuDVM ★ 2.4k
1
vote
3
replies
2.4k
views
CummeRbund: unable to use getGenes to retrieve short names in R
RNA-Seq cummeRbund R
updated 8.0 years ago by 11k • written 8.0 years ago by ★ 2.4k
0
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0
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2.4k
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Comment: C: CummeRbund: unable to use getGenes to retrieve short names in R
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
0
replies
6.2k
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Comment: C: Tophat - Understated Number Of Reads In The "Align_Summary.Txt" File
8.0 years ago by CandiceChuDVM ★ 2.4k
1
vote
1
reply
4.7k
views
Answer: A: RNA-Seq for DE analysis
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
7.9k
views
Answer: A: Downloading the UCSC gene annotation files
8.0 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
2.7k
views
Answer: A: Bowtie2 "test run" to find out the value for -r/--mate-inner-dist in Tophat2
8.1 years ago by CandiceChuDVM ★ 2.4k
3
votes
3
replies
1.9k
views
Is dog (Canis familiaris) transcriptome considered well-annotated?
RNA-Seq alignment annotation
updated 8.1 years ago by ▴ 800 • written 8.1 years ago by ★ 2.4k
0
votes
0
replies
1.9k
views
Comment: A: Is dog (Canis familiaris) transcriptome considered well-annotated?
8.1 years ago by CandiceChuDVM ★ 2.4k
0
votes
0
replies
45k
views
Comment: C: Up-to-date RNA Sequence Analysis Training/Courses/Papers?
8.1 years ago by CandiceChuDVM ★ 2.4k
2
votes
0
replies
45k
views
Comment: C: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
8.2 years ago by CandiceChuDVM ★ 2.4k
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