User: Djie

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Djie180
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180
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6 years, 10 months ago
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7 years, 11 months ago
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Posts by Djie

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Error In Samtool Installation Through Cygwin
... If installing through cygwin is not a specific requirement, you can try installing the windows port for samtools: http://bow.codeplex.com/. This is probably a lot easier. ...
written 6.9 years ago by Djie180
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Answer: A: How Are Transposable Elements Marked In A Genome?
... I'm not sure if I fully understand your question, but I'll give it a shot: Actually most transposable elements are not capable anymore of moving around in the genome. Only some Alu, L1, SVA and (HERV?) families are capable of transposing in the human genome. The rest of the transposable elements (T ...
written 6.9 years ago by Djie180
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Answer: A: Existing Tools For Generating Web Based Network Visualisation
... @Fengyuan Hu I just stumbled upon a new java applet which is also capable of displaying networks. It's called Cobweb http://bioinformatics.charite.de/cobweb/. I tested it with your cytoscape web example of the regulatory network of the fly (downloaded the xgmml file) and used it for cobweb. On first ...
written 8.0 years ago by Djie180
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Comment: C: Existing Tools For Generating Web Based Network Visualisation
... Good question. I'm also interested what the performance would be of a javascript based network displayer like d3 or InfoVis. ...
written 8.0 years ago by Djie180
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Comment: C: Existing Tools For Generating Web Based Network Visualisation
... D3 also looks like a great library. Thanks for the suggestion. Do you think using SVG + javascript will have a better (faster) user experience when using large networks than cytoscape web (flash + javascript)? ...
written 8.0 years ago by Djie180
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Comment: C: Existing Tools For Generating Web Based Network Visualisation
... So far Cytoscape Web also seems to me the library with the most features out of the box. Thank you for the tips on using Cytoscape Web! ...
written 8.0 years ago by Djie180
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Existing Tools For Generating Web Based Network Visualisation
... Hi all, I'd like to make a web application which is able to automatically generate graphs / networks. For instance I'd like to visualize gene expression data stored in a relational database. Nodes would consist for instance of chemicals (ie chemical(s) used in the experimental condition), gene grou ...
web network graph cytoscape written 8.0 years ago by Djie180 • updated 6.1 years ago by miro.marchi10

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